Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq381 149 3e-31 >seq381 Length=31917 Score = 149 bits (164), Expect = 3e-31 Identities = 389/588 (66%), Gaps = 14/588 (2%) Strand=Plus/Plus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || |||||||||||||| || ||| || || ||| | |||||| || | Sbjct 25451 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCTGGCAAGACGACGTTGGCGCTGAGCTGC 25510 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | ||||||||| ||| ||| | | || | |||||| || || ||| | Sbjct 25511 ATTGCTGAGGCCCAGAAGACCGAGGGCGGAGTCTGCGCATTCATCGATGCTGAGCATGCC 25570 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | ||| | | |||||| ||| ||||| || || ||||| || || |||| Sbjct 25571 ATTGACGCCCATTACGCCAAGGCTCTCGGCGTCGACATCGACGCGCTGTACGTCTCGCAG 25630 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | ||||| | || || ||||||| ||| ||| ||| ||| || | ||| Sbjct 25631 CCCGACTCGGGCGAAGAAGCTCTTGAGATCGCCGACACGCTCATCAGGTCGGGAGCGGTG 25690 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 | || | || ||||| |||||| || ||||||||||| |||||||| ||||| || Sbjct 25691 GACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGTGCCGCGAGCGGAGCTGGAAGGTGAA 25750 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||| ||| | | ||||| || || || ||| |||||| |||| |||||| Sbjct 25751 ATGGGCGACCAGCAGATTGCGCTGCAGGCGCGACTCATGAGTCAGGCGCTGCGGAAGCTG 25810 Query 66330 ACCGGCACGATTGCCAGCACCAAC-ACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAA 66388 || || || | ||| ||||| | || | | | |||| ||| | ||| |||| Sbjct 25811 ACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTATCTTCCTGAACCAGATCCGCCAGAA 25869 Query 66389 GATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTT 66448 | | |||| | || ||| | |||| || | || || | || |||||| Sbjct 25870 GGTTGGCA---TTATCTTCGGATCTCCTGAGGTGACGTCAGGCGGCACTGCCTTGCGCTA 25926 Query 66449 CTACGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGA 66505 ||||| || ||||| |||| | || | || |||| | |||||||| || | Sbjct 25927 TTACGCGTCTGTGCGGTTGGACATTCGTCGTAAGACGGCCATC---AAGGAAGGTGACCA 25983 Query 66506 GGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 || |||||||||| ||| |||||||| | ||||||||||||||| Sbjct 25984 GGTTGTCGGCAACGAGACGGTGGTGAAGGTGGCCAAGAACAAGCTGGC 26031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242451871472840