Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq503 107 1e-18 seq497 86.0 5e-12 >seq503 Length=26447 Score = 107 bits (118), Expect = 1e-18 Identities = 190/277 (69%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | || | ||||| |||| || || ||||| | ||| | |||||| Sbjct 5176 CGTGGCCGGCCTGGGCATCACGGCGGGCGCGCACCGCCTGTGGTCGCACCGCGGCTACAA 5235 Query 108396 GGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACAC 108455 ||||| ||| | | |||||||| ||| ||| ||| |||| || ||| Sbjct 5236 GGCCAAGCTGCCGCTGCGCGTGTTCCTCATGCTGTGCAACTCCATGGCCTTCGAGGGCAC 5295 Query 108456 CATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGA 108515 |||| ||||| || ||| ||| | || ||||||||| ||| |||||||||||||| Sbjct 5296 CATCTTCGAGTGGTCGCGCGACCACCGCGTGCACCACAAGGCCTCGGACACGACGGCCGA 5355 Query 108516 CCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAA 108575 ||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || ||| Sbjct 5356 CCCGCACAACTCGGGCCGCGGCCTCTTCTTCTCGCACATGGGCTGGGTCATGGTGCGCAA 5415 Query 108576 GGACCCCGACGTGATCTCGGCCGGTCGAAAAATGGAC 108612 | || ||||| | | ||||| || ||| | ||| Sbjct 5416 GCACAAGAACGTGCGCGCCGCCGGCCGCAAACTCGAC 5452 >seq497 Length=26707 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| |||||| ||| Sbjct 17853 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGGTGGC 17794 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| ||| || | | | || |||| ||| ||||| |||| ||||| || | | Sbjct 17793 CGACCCGCACGACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTGGTCAA 17734 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | ||| || |||||| Sbjct 17733 GAAGGACCCCAAGGTGGTCAAGGCCGG 17707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381743626592880