Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq14 143 3e-29 seq54 127 2e-24 seq498 125 7e-24 seq5612 105 6e-18 seq710 102 8e-17 seq374 96.9 3e-15 >seq14 Length=110323 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||||||||| || || || ||||| |||| | Sbjct 101134 CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 101075 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 101074 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 101015 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || |||||||| | ||||| ||| | ||||| ||| || Sbjct 101014 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCAC 100956 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||||||||| || || || || |||||||| Sbjct 100955 GTCGAGCGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 >seq54 Length=76991 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || | ||||| || | || ||||| || || || ||||| |||| Sbjct 57091 TCCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 57032 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 57031 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 56972 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||||||||| ||||||||||| | ||||| ||| | ||||| ||| | Sbjct 56971 GATGCCCTCCTTGTCTTGAATTTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCA 56913 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | ||| ||||||||||| || || || || |||||||| Sbjct 56912 CGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 56864 >seq498 Length=26695 Score = 125 bits (138), Expect = 7e-24 Identities = 303/455 (67%), Gaps = 8/455 (2%) Strand=Plus/Minus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGA 145817 ||||| ||||||||||||||||||||| |||| ||| | ||| ||||| || ||| Sbjct 5508 GCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT---CGA 5452 Query 145818 CATGACCGAGTACGTGG---GTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAAT 145874 | ||| | | ||| | ||||||| | || || || || ||||| ||| Sbjct 5451 CGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAAT 5392 Query 145875 GAAAGGAGCCCGGTCGGCGGCCATGTCTATCA-TGCACTTTGATTTAATTTCCCATGCGG 145933 | | | | | |||||||| | || ||| | | ||| | || || | | ||||| | | Sbjct 5391 GTAGGCACCGCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGA-TCTCCCACACCG 5333 Query 145934 TTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTT 145993 | || | ||||||||||| | ||| || | | | |||||||| || || | Sbjct 5332 TCTTGTACTTCTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGT 5273 Query 145994 CGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGA 146053 || || || | ||||||| || || || | ||| || || | ||| |||| | Sbjct 5272 CGTTCAGGATCTGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCA 5213 Query 146054 TGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGC 146113 | || |||| ||| || | | ||||| ||||| || || || | |||| |||| Sbjct 5212 TCAGGTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGG 5153 Query 146114 TGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCA 146173 ||| | ||||||| ||||||||||| || || ||||| ||||| | ||| || |||| Sbjct 5152 ACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCA 5093 Query 146174 TGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGT 146208 || |||||||||| ||||| | | |||||| Sbjct 5092 TGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGT 5058 >seq5612 Length=1235 Score = 105 bits (116), Expect = 6e-18 Identities = 127/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| ||| | | ||| | |||||||||| || || |||||||||||||| || Sbjct 456 GGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTA 398 Query 47471 -TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| || ||| ||||| ||| || | |||| || ||||| | ||| ||| | Sbjct 397 CTCACTGGGCGTGTCC-AAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGA 339 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| |||||||||||||||| || ||||||||||| ||||| || Sbjct 338 TCTCGCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTA 290 >seq710 Length=19765 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 5326 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 5385 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| |||||||||||||| | || Sbjct 5386 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 5445 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 5446 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 5505 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 5506 ATCTGCATG 5514 >seq374 Length=32324 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | |||||||||| || || |||||||| ||| | || Sbjct 1488 GGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGTT-GTA 1430 Query 47472 CA-GCTAAAGTATCCCAA-GATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || | |||| ||| ||| || |||| || ||||| | ||| ||| | Sbjct 1429 CTCGCTGG-GTGTGCCAAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGA 1371 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | || ||| |||||||||||||||| |||||||||||||| ||||| || Sbjct 1370 TCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475463532624800