Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq498 100 3e-16 seq54 89.7 5e-13 >seq498 Length=26695 Score = 100 bits (110), Expect = 3e-16 Identities = 292/449 (65%), Gaps = 3/449 (1%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| | || ||| || || ||| | |||||||| || | ||| | ||| | Sbjct 3772 AAGGTGGTGGAGCGTCCGCAGCAAATGATTATGCGCGTGGCGCTGGGCATCCACAAGGCC 3831 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||| | |||| || || ||||| | ||||| || || || |||||||||||| Sbjct 3832 GACATCCAGGCCGCGCTGGAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCG 3891 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 | || || |||| |||||| ||| | || ||| |||| || || || | | Sbjct 3892 ACGCCGACGCTGTTTAACGCCGGAACGCCGCGTCCGCAGCTGTCCTCCTGCTTCCTATTG 3951 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || ||| || ||| |||| ||||||||||| || | | ||||| | || Sbjct 3952 GCCATGCAGGACGACTCCATCGAGGGTATCTATGACACGCTCAAGCAGTGCGCCTGCATC 4011 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 ||||| | | || || || ||| | | | ||||| || | | | | | ||| | Sbjct 4012 TCCAAGTGGGCGGGGGGTATCGGCATCAGCATGCACAACATTCGCGCCACCAACAGCTAC 4071 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAAC 123257 || || ||||| |||| | || ||| || |||||||||| || | ||| || Sbjct 4072 ATTCGAGGCACCAACGGCTCCTCCAACGGCATCATCCCCATGCTGCGCGTGTTCAACGAC 4131 Query 123258 GCCGTGCGGCACGTCGACCAG---GGCGGCAAACGCAAAGGCGCGATGGCGATCTATCTA 123314 | | ||| |||| |||||| |||||||| ||||| ||| | || ||||| || Sbjct 4132 ACGGCCCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCTTCGCCATCTACCTC 4191 Query 123315 GAACCGTGGCACGTTGATGTGTACGATTT 123343 || || ||||||| || |||| ||| || Sbjct 4192 GAGCCCTGGCACGCCGACGTGTTCGAGTT 4220 >seq54 Length=76991 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || || || | | ||| || || || || || ||||| ||||| || || |||| Sbjct 57092 TTCCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGC 57033 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | || || || | || || || ||| | |||| || |||||||| |||| Sbjct 57032 TCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 56973 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | ||||| || || ||||||||||| || || | || | || | | ||| || | ||| Sbjct 56972 GGATGCCCTCCTTGTCTTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 56914 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | ||| |||||||| || || || || || || |||||| Sbjct 56913 ACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATC 56863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451967774249200