Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq498 250 3e-61 seq374 159 4e-34 >seq498 Length=26695 Score = 250 bits (276), Expect = 3e-61 Identities = 1072/1674 (64%), Gaps = 38/1674 (2%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || ||||||||||||| ||||||||| || | ||||| || | | ||| Sbjct 5502 GTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT 5443 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | || || || | ||| || ||| | || || ||| || || Sbjct 5442 GCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACC 5383 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || || |||| || || | || ||||| |||||| |||||||| || |||| Sbjct 5382 GCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 5323 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 | ||| | | ||| ||||| || | || || | ||||| || | || | || Sbjct 5322 CTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGAT 5263 Query 115803 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTT 115862 ||| || || || ||||| || | || |||| |||| || |||| ||| Sbjct 5262 CTGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTT 5203 Query 115863 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGG 115922 || || | |||||||| || || || | || ||||||| |||||| || Sbjct 5202 GTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGG 5143 Query 115923 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 115982 ||| | | |||| ||||| || | ||| ||||| ||||| || ||||||||||| |||| Sbjct 5142 CTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCAC 5083 Query 115983 GAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA 116042 || || |||||| ||||| | | |||||||| || |||||| | Sbjct 5082 CAGCAGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCGCCCAGTTCCA 5023 Query 116043 GTT----GAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTG 116098 | ||| | | | | ||||||| || ||||||| ||| || | | || | Sbjct 5022 GAGACCCGAGGACGGGGTGACGC-CCCACATGTCGAACTGGAAGATCCCCTTGCTGGCCG 4964 Query 116099 GCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT-TCGGAGCTCGCCT 116155 |||| |||| || ||||| || ||||| | |||| | |||| || | || || Sbjct 4963 GCGAGCCCTGGAACGTCTCGTAGGGGCCG---AGCTCCTTGGCAATCTCCATGGACGTCT 4907 Query 116156 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 116215 ||| ||| |||| || || ||||| || ||| || | | ||||| ||| Sbjct 4906 CGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGCTCGC 4847 Query 116216 AATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 116274 || |||||| | || | || || | |||||||| || ||||| |||| ||| Sbjct 4846 TCTCGAACGCGT-AGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATGCCG 4788 Query 116275 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCG 116334 || ||||| || | ||| || ||||| || || |||||||||| | || ||| Sbjct 4787 ATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGATAGTAGTTAACGTCG 4728 Query 116335 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 116394 || ||| | || || || ||| || ||||| |||| || | || || | ||| || Sbjct 4727 ATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTAGTCG 4668 Query 116395 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454 || || | || | || |||| || || || | || ||||| || ||||| Sbjct 4667 AACACGC------CGTCGTCCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGCACACG 4614 Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAA 116512 | ||| || |||||||| || | || |||| || || | | Sbjct 4613 GCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGG--A 4556 Query 116513 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATG 116572 ||||||| | ||||| || || ||||| ||| ||| |||||||||||||| | | Sbjct 4555 TGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAGG 4496 Query 116573 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAG 116632 || |||||||| | || | | || || || ||| || | || || | | Sbjct 4495 GCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGCGTTGA- 4439 Query 116633 TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCAC 116689 ||| ||| || || ||||| ||||||||| ||||||| ||||||||| || | Sbjct 4438 TGGTCTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACTCGTCCC 4379 Query 116690 CCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCC 116748 || |||| ||| ||||||| || |||| | || ||||| | | ||| | || Sbjct 4378 CC-CAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCGTTG 4320 Query 116749 TCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC-CCGACA 116807 |||| || ||||||||||| ||||| || | ||| ||||| |||| || || | | || Sbjct 4319 GCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGGGCA 4260 Query 116808 GCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTG 116867 | || | || | || || || |||| |||| || || | | || ||||| Sbjct 4259 CGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCGGCGTG 4201 Query 116868 CCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATA 116924 ||| || || ||||| | |||| |||||||| | || |||||| || || Sbjct 4200 CCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTA 4141 Query 116925 CCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT 116984 || ||||| |||| || ||||| ||||| || ||||| || | || ||| || || Sbjct 4140 CCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCGTTGGT 4081 Query 116985 CCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGC 117044 || ||||| ||| |||| | | | ||| ||| || || |||||||| || Sbjct 4080 GCCTCGAATGTAGCTGTTGGTGGCGCGAATGTTGTGCATGCTGATGCCGATACCCCCCGC 4021 Query 117045 CCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACC 117104 |||||| ||||| ||||||| | |||| || | ||||| || ||||| ||||| | Sbjct 4020 CCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAGTCGTC 3961 Query 117105 CTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164 || | || | ||||||||| |||| || || | || || || ||||| || || Sbjct 3960 CTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAAACAG 3901 Query 117165 GGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCA 117217 || || |||||||| |||| | || | || ||||| ||||| ||||||| Sbjct 3900 CGTCGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTCCA 3848 >seq374 Length=32324 Score = 159 bits (176), Expect = 4e-34 Identities = 364/537 (68%), Gaps = 18/537 (3%) Strand=Plus/Plus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | ||| ||| | Sbjct 1315 CTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCAT 1374 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | || || |||||||| ||| | || ||||||| || | | | | Sbjct 1375 GTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTTGGCACACCCAGCGAGTACAA 1434 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||| || | ||| |||| ||||||| |||| | | |||||||| ||||| || Sbjct 1435 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 1494 Query 127405 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGA 127463 | ||| ||||||| ||| | |||| | | ||| || |||| || || || || | Sbjct 1495 CTCCACA-GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAA 1553 Query 127464 TGGCGTGAATAGTGTCCACCC-CAGGTCTATT-----GCGTAAAGT-CTTGAAGAGTTCC 127516 | |||| | | | || ||| | | || || | ||| | ||| | | Sbjct 1554 TCTCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAGCTTGGAGTACATGAGG-----C 1607 Query 127517 ACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 || || || || ||| | ||||||||||||| ||| || || |||||||||| ||| Sbjct 1608 AC-GCGAAGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGG 1666 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || |||||||| || |||||||| | |||||| || | || || ||||| |||||||| Sbjct 1667 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAA 1726 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATC 127695 || |||||||| |||||||| | |||||||| | | || || || | || Sbjct 1727 ATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACACGCGGGTC 1785 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||||| | |||||| || || || |||| | || |||| |||| |||||| Sbjct 1786 GCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCGATCGC 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613459116373200