Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq498 181 2e-40 seq374 159 6e-34 seq5612 154 2e-32 >seq498 Length=26695 Score = 181 bits (200), Expect = 2e-40 Identities = 415/614 (68%), Gaps = 23/614 (4%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| ||||||| ||||||| |||| | || || || |||||||| Sbjct 5550 CTTGTCCACAGTGAACTTGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 5494 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | |||||| || | || ||||| | | | Sbjct 5493 GCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTGCTGATGGT 5434 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| ||||| || ||||| || ||| ||| |||| || || || | Sbjct 5433 CGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATG-TAGGCACCGCGGTCGG 5375 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | | | ||||||| |||||||||||||||||| || || || Sbjct 5374 CCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGA 5315 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT- 204132 ||| | || | | | ||| | ||| | |||||| |||| || | ||| || Sbjct 5314 CGTGATCGGGGATGGCCT-TCACCTTCTGCACGGAGCCGCCGTCGTTCAGGA-TCTGATT 5257 Query 204133 --CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 | |||| | ||| ||||||| | || |||||| || ||||| ||| Sbjct 5256 GCGCACGTCGGGT--GTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTTGTTC 5199 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | |||| || || |||| |||||| | ||| || ||| |||| ||| | || ||| Sbjct 5198 ACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGCTCG 5139 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 | | |||||||||||| | ||||| || ||| |||||||||||||| |||| ||| Sbjct 5138 ATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACCAGC 5079 Query 204311 AGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATC 204370 || |||||||| | ||||| ||| || | ||| || | | ||||| | || Sbjct 5078 AGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCGCCCAGT--TCCAGA 5021 Query 204371 GCACTG-----GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGC 204425 | | | || | |||||||||||||||||||| ||||| || | ||| | || Sbjct 5020 GACCCGAGGACGGGGTGACGCCCCACATGTCGAACTGGAAGATCCCCTTGCTGGCCGGCG 4961 Query 204426 TGCCCTTGTACGTC 204439 ||||| | ||||| Sbjct 4960 AGCCCTGGAACGTC 4947 >seq374 Length=32324 Score = 159 bits (176), Expect = 6e-34 Identities = 475/727 (65%), Gaps = 17/727 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| | || || ||||| | |||| ||||| Sbjct 1336 CTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATCCAGTCGAACGGGTT 1395 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||||||| ||| ||| || | || || | || || | ||| ||||| || || Sbjct 1396 CTTCACGTTGTAGATCTTTGGCACACCCAGCGAGTACAACAGACGGTCGGCCACGAACTC 1455 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | |||| || || | |||| || ||||||| || Sbjct 1456 GATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACAGGGAGCGAGTCGCG 1515 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||| ||| | ||||| ||| |||||||| || | || || | | Sbjct 1516 CACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAATCT-CGTGCACGCGGCTCTCCG 1574 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||| || | | | | ||| ||||||||| ||||| ||||| |||| Sbjct 1575 GCAGCTTGTTCACCAGCTTGGAGT---ACATGAGGCACGCGAAGTCCGTGTGCATACCCT 1631 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||| | |||||| || | | | ||||| ||||||| || ||| |||| Sbjct 1632 CGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGA 1691 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| ||| | | | | || || || ||||||||||| || |||||| Sbjct 1692 GCCAGAAGATGG-AGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCGGCGAACGCC 1750 Query 160067 ACGAGCCTCTC-----ACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121 | || | ||| || | | | || ||| || |||| | ||||| | Sbjct 1751 AGCAGACGCTCCGGGTACGACGACACACGCGGGTCGCA-----CCACTTGAGCGCCCAGT 1805 Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 || ||||| | |||||| || ||||| ||| | || ||||| |||| Sbjct 1806 GCGCTTTCTTCTTCACGCACGGGATCGTCTCGATCGCGCGCAGCAGGTGGTCCTTCTCCA 1865 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | |||||||| || | |||||| |||||||| || | ||| | || |||| Sbjct 1866 CGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGA 1925 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| ||| |||||| | |||||| | |||||| || | |||| Sbjct 1926 TGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACTTCATTGCTGAAGT 1985 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | |||| || | || || | |||||| || || ||||| |||| |||||| Sbjct 1986 TCATGGCCAGGTTCTCGTTCACAATACCGTCGCTCGCAGCGAAGAACGCCAGCACGTGCT 2045 Query 160362 AGATGAA 160368 |||||| Sbjct 2046 TGATGAA 2052 >seq5612 Length=1235 Score = 154 bits (170), Expect = 2e-32 Identities = 479/733 (65%), Gaps = 29/733 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 304 CTTCTCAAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT 363 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| |||| ||| ||| | | || || | ||||| | ||| ||||| || || Sbjct 364 CTTGACGTTGTAGATCTTGGACACGCCCAGTGAGTACAGCAGGCGGTCGGCCACGAACTC 423 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | |||| || || | ||| || || |||| || | Sbjct 424 GATGTACTGGCACATGAGCGCCGAGTTCATGCCAATGAGCTCCACAGGCAGCGAATCGCA 483 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || ||||| | ||||||| | ||||| ||| ||| |||| || | |||| Sbjct 484 CACGAACTCGTGCTCAATCACCACCGCGTCGCGCACGATCT-CGTG-CACG--------- 532 Query 159889 CGGCTTGCC--CAAAATGTGGTC---CTTAAA---CAGGAGGCACGCAAAGTCGCAGTGC 159940 |||||| | || ||| | | ||| | || ||||||||| ||||| |||| Sbjct 533 CGGCTTTCGGGCAGCTTGTTGACGAGCTTCGAGTACATGAGGCACGCGAAGTCCGTGTGC 592 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 | || ||||| || ||||| |||||| || | | | || || ||||||| || ||| Sbjct 593 ATACCTTCGTCTCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGC 652 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGC 160059 |||||||| || |||| ||| || | | | | |||||||| ||||||||||| || Sbjct 653 TTCTTGAGCCAGAAGATGGA-GCAGAACGAGCCCGAGAAAAAGATGCCCTCCACGGCAGC 711 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---G 160115 ||||||| || | ||| | || | || ||||| |||| ||| | Sbjct 712 GAACGCCAGCAGACGCTCCGGGTACGACG----ACACTCGCGGGTCGCACCACTTGAGCG 767 Query 160116 CCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCT 160175 |||| | || ||||| || |||||| || ||||| ||| | || || || Sbjct 768 CCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCGATGGCACGCAGCAGGTGGTTCT 827 Query 160176 GCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACAT 160235 |||| || |||||||| ||| |||| ||| |||||||| || ||||| | | Sbjct 828 TCTCCATCGTGTCCTTGATGTAGGTATCAATGAGCAGCGAGTACACCTCGGCGTGGATGT 887 Query 160236 TTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTG 160295 | |||||||| ||||| ||| |||||| | |||| | |||||| || | Sbjct 888 TCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGACCTCGGGCACCTGCACTTCGTTGC 947 Query 160296 TGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACA 160355 |||| | |||| || | || || | |||||| ||| || ||||| |||| || Sbjct 948 TGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAGCA 1007 Query 160356 CGTGAGAGATGAA 160368 |||| |||||| Sbjct 1008 CGTGCTTGATGAA 1020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795092879711200