Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq710 170 2e-37 seq14 168 8e-37 seq54 140 4e-28 seq50 113 5e-20 >seq710 Length=19765 Score = 170 bits (188), Expect = 2e-37 Identities = 154/191 (81%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 5324 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 5383 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | ||| | || |||||||||| ||| |||| ||||| | | | Sbjct 5384 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 5442 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || ||||| |||| ||||||||| ||||||||||| || || ||| Sbjct 5443 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 5502 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 5503 AAGATCTGCAT 5513 >seq14 Length=110323 Score = 168 bits (186), Expect = 8e-37 Identities = 180/235 (77%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| ||||| || | | ||||| |||||| |||| ||| |||||| ||||| ||||| Sbjct 101141 TTAGTTGCCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTA 101082 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || ||||| |||| || ||||||||||| ||||| |||| |||||||||||| Sbjct 101081 GTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 101022 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | ||| | || |||||||||| ||||||| ||| | ||| | | | || ||| || Sbjct 101021 AGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACG 100963 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || | ||||||||| ||||| |||||||| || || ||||| ||||| Sbjct 100962 GCTCCACGTCGAGCGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 >seq54 Length=76991 Score = 140 bits (154), Expect = 4e-28 Identities = 182/248 (73%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 46351 TGTA-CTATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTT 46409 |||| ||| ||| || || || | | ||| | |||||| || | || |||||| | Sbjct 57107 TGTAGCTAGTTTAGTTTCCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCT 57048 Query 46410 GGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGC 46469 |||| ||||||||| || ||||| |||| || ||||||||||| ||||| |||| | Sbjct 57047 GGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGAC 56988 Query 46470 GCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACC 46528 |||||||||| | ||| | || ||||||||| || |||| ||| | ||| | | | | Sbjct 56987 GCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGAATTTTCTGCTTCA-CGTTGTCGATC 56929 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 | ||| || ||||| |||| |||||| || ||||| |||||||| || || ||||| Sbjct 56928 GAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATC 56869 Query 46589 TGCATTTT 46596 ||||| || Sbjct 56868 TGCATCTT 56861 >seq50 Length=78893 Score = 113 bits (124), Expect = 5e-20 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||||| ||||| |||||||| || || ||||| | Sbjct 18475 ACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 18534 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||||||||||||||| |||| |||||||||||| Sbjct 18535 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 18576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565194099440400