Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq374 298 5e-76 seq5612 291 8e-74 seq14 140 3e-28 seq54 125 7e-24 seq710 122 9e-23 seq50 104 2e-17 >seq374 Length=32324 Score = 298 bits (330), Expect = 5e-76 Identities = 541/778 (70%), Gaps = 20/778 (3%) Strand=Plus/Plus Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 ||| | ||||||||||||||||||||| || ||||| | | || | || | ||| Sbjct 1435 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 1494 Query 132783 ACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGA 132841 ||| || |||| ||| | ||| ||| ||||||| | ||||||||| || | Sbjct 1495 CTCCACAGGGAGCGAGTCGCGCACGAACTCGT-GCTCGATCACCACCGCGTCGCGCACAA 1553 Query 132842 TTTCCCTAACGCGCGCCGCGCTC-GGCCG-TTG--CACCAAATGCTTGAA---CATCAAG 132894 | || ||||| || ||| ||| | ||| ||||| ||||| | ||| | | Sbjct 1554 TCTCGTGCACGCG----GCTCTCCGGCAGCTTGTTCACCA---GCTTGGAGTACATGAGG 1606 Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || || ||||| |||| |||||||| | | || || ||||| ||| ||| | Sbjct 1607 CACGCGAAGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGG 1666 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || |||||||||||||| || |||||||| || |||| | ||| |||||| ||||| Sbjct 1667 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAA 1726 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG-C 133073 | |||||| ||||| ||||| |||| ||| ||||| | ||| | | || || | Sbjct 1727 ATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGACGACACAC-GCGGGTC 1785 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 | ||| |||||||| | || || | || |||||||| ||||| ||||| ||| Sbjct 1786 GCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCGATCGCGCG 1845 Query 133134 CAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACAT 133193 || || || ||||| | | | | ||| |||||||| || ||| |||| Sbjct 1846 CAGCAGGTGGTCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACAC 1905 Query 133194 TTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCAC 133253 |||||||| | |||||| |||||||| || |||||||| ||||| || ||||| ||| Sbjct 1906 CTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCAC 1965 Query 133254 CTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGC 133313 ||||||||| | ||| | | |||| || ||||| || || |||||||| || || Sbjct 1966 CTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACAATACCGTCGCTCGCAGC 2025 Query 133314 GAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTC 133373 ||| || |||||||||||||||||||| ||||||||||| ||| | | ||||||| Sbjct 2026 GAAGAACGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTC 2085 Query 133374 GCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTT 133432 | | | | || | |||||||| ||||||| | ||||| ||||| |||||||| || | Sbjct 2086 -CTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCT 2144 Query 133433 TGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 ||||||| ||||| ||| | || || || || | ||| |||||| ||||| Sbjct 2145 TGTACATCTGCCACACGTCGTGCTCCTGGATCGGGAACAGCACGAACCGGTTCGGGTT 2202 >seq5612 Length=1235 Score = 291 bits (322), Expect = 8e-74 Identities = 581/850 (68%), Gaps = 17/850 (2%) Strand=Plus/Plus Query 132610 TATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATA 132669 || |||||||| |||||||| || || || || |||| || || || | ||| Sbjct 290 TACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 349 Query 132670 AAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTG 132729 | || || ||||| ||||||| ||||| || ||| | ||||| | | Sbjct 350 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAGTGAGTACAGCAGGCGG 409 Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC 132789 |||||||||||||||||||| || ||||| | | || | || | || ||| Sbjct 410 TCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCAATGAGCTCCACA 469 Query 132790 GGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCT 132848 ||||||| ||| | ||| ||| |||| || | ||||||||| ||||| || Sbjct 470 GGCAGCGAATCGCACACGAACTCGT-GCTCAATCACCACCGCGTCGCGCACGATCTCGTG 528 Query 132849 AACGCGCGCCGCGCTCGGCC-----GTTGCACCAAATGCTTGAACATCAAGCAAGCAAAG 132903 ||||| || |||| | |||| || | | | | |||| | ||| || ||| Sbjct 529 CACGCG----GCTTTCGGGCAGCTTGTTG-ACGAGCTTCGAGTACATGAGGCACGCGAAG 583 Query 132904 TCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATG 132963 || |||| || ||||| | | ||||| ||||| ||| ||| || |||||| Sbjct 584 TCCGTGTGCATACCTTCGTCTCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATG 643 Query 132964 AGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCG 133023 |||||||| || |||||||| || |||| | ||| |||||| || |||| |||||| Sbjct 644 AGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAAAAGATGCCCTCC 703 Query 133024 ACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG-CGATCCAGCG 133082 ||||| ||||| |||| ||| ||||| | ||| | || || || || ||| Sbjct 704 ACGGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTC-GCGGGTCGCACCACTT 762 Query 133083 CAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACG 133142 |||||||| | || || | ||||||||||| ||||| |||||||| || || | Sbjct 763 GAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCGATGGCACGCAGCAGGTG 822 Query 133143 GAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTG 133202 | ||||| || | | |||||| || ||||| ||| |||| || | ||| Sbjct 823 GTTCTTCTCCATCGTGTCCTTGATGTAGGTATCAATGAGCAGCGAGTACACCTCGGCGTG 882 Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262 | |||||| |||||||| || |||||||| ||||| || ||||| |||||||||||| Sbjct 883 GATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGACCTCGGGCACCTGCACTTC 942 Query 133263 TTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGC 133322 | ||| | | |||| || ||||| ||||||||||||||||||||||| ||||| Sbjct 943 GTTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGC 1002 Query 133323 CAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTC 133382 |||||||||||||||||| ||||||||||| || | ||||||| | | | Sbjct 1003 CAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCTGGTTGGCCCAGTC-CTTGAGGT 1061 Query 133383 CTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATAC 133441 | || | | |||||| ||||||| | ||||| ||||| ||||||| || ||||| || Sbjct 1062 CGTGCACCTGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCGGTCTTCTTGTA-ATCT 1120 Query 133442 TCCACATGTC 133451 ||||| ||| Sbjct 1121 GCCACACGTC 1130 >seq14 Length=110323 Score = 140 bits (154), Expect = 3e-28 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| ||||||| ||| | | Sbjct 100908 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 100967 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | || || | ||||| ||||| || |||||| |||| Sbjct 100968 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCAT-CCCGCCTGACC 101025 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 101026 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACA 101085 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | |||||||| ||||||||||| || | || ||| Sbjct 101086 ACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 101135 >seq54 Length=76991 Score = 125 bits (138), Expect = 7e-24 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | Sbjct 56861 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 56920 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | | |||| | || | ||||| | ||||| ||||| || |||||| | Sbjct 56921 TCGGACTCGATCGACAACG-TGAAGCAGAAAATTCAAGACAAGGAGGGCAT-CCCGCCTG 56978 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | ||| ||||| ||||| || |||| ||||| || | ||||| Sbjct 56979 ACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACT 57038 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||||| |||| || || ||||||| ||| | | ||||| Sbjct 57039 ACAACATCCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGTCTTCGTGGCGG 57090 >seq710 Length=19765 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 5513 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 5454 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| ||||| || |||||| ||||| Sbjct 5453 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCAT-CCCGCCTGACCA 5395 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 5394 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 5335 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 5334 CATCCAGAAGG 5324 >seq50 Length=78893 Score = 104 bits (114), Expect = 2e-17 Identities = 100/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 18588 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 18529 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || ||| |||||||||||||| ||||| ||| |||||||| ||||||||||| || | Sbjct 18528 ACGCTCTCGGACTACAACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTGCGTCTGCG 18470 Query 38465 AGGCGG 38470 || || Sbjct 18469 TGGTGG 18464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500133598956800