Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq761 430 2e-115 seq30 96.9 4e-15 seq3706 93.3 5e-14 seq495 93.3 5e-14 >seq761 Length=18355 Score = 430 bits (476), Expect = 2e-115 Identities = 866/1277 (68%), Gaps = 43/1277 (3%) Strand=Plus/Plus Query 6886 TTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGT 6945 |||||| || ||||| || || || | ||| || | | ||||| | ||| || || Sbjct 6136 TTTCTTGGAAGGAATGGTGGTGTTACGCGGGATGAGCTTCGTCATGACACCGCCGGCGGT 6195 Query 6946 TTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTG-AACA------- 6997 || || || || || | || | |||||||| |||| ||| || || ||| Sbjct 6196 CTCCAGGCCTAGCGATAACGGAGCCACGTCCAGTAGTAGCAGATCCTGCAACTTGGACGA 6255 Query 6998 -GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGC 7056 || ||||| || || | | |||||||||||| || || || ||||| ||||| || Sbjct 6256 CGAGTCGTTGCC---ACTC---AGGATGGCGGCTTGCACGGTGGCACCGTAGGCGACTGC 6309 Query 7057 CTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTG 7116 ||||| || || |||| || ||| || || || || || | ||| |||| || Sbjct 6310 TTCATCAGGATTGATCGACTTGAACAGCTCCTTGCCATTGAAGAAGTCCATCAACAACTG 6369 Query 7117 TTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTT 7176 || | |||||||| || ||||| || |||||||| || | || ||||| | | || Sbjct 6370 CTGCACCTTCGGGATGCGAGTCGACCCTCCGACCAAGACCACCTCGTTCACCT--GGTTC 6427 Query 7177 ATCGAT--CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAG 7234 |||| ||| ||||| || || | | ||||| | |||| || || || || Sbjct 6428 TTCGACAGCTTGGAGTCGCGCAGAACCTGCGCCACAGGATTCATAGTCTTGCGAAAGAAC 6487 Query 7235 TCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCG 7294 || | || || |||||||| || ||||| ||||||| | | |||||| | |||||| Sbjct 6488 TCGTTGCAGAGATCCTCAAATCGAGCACGAGTAATGGTCGAGTTGAAATCGATGCCGTCT 6547 Query 7295 TATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGC 7354 | | |||||| || || | | | ||| |||| | || | || ||||| |||||| Sbjct 6548 AACAGCGAATCGATCTCCAGGTACGCTTGCGCCGAAGTGGACAGAGTACGCTTCGCGCGC 6607 Query 7355 TCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGT 7414 || |||| || || | |||||| | ||||| | ||| | | | ||| || | | | Sbjct 6608 TCGGACGCTGTACGGAGACGACGCATCGCACGTGAGTTCACTGTCAGATCCTTGTGGTAT 6667 Query 7415 TTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCT------CGA--ATCGAAATCTT 7466 || || || ||||| ||| ||||| | ||| ||| ||| || |||| Sbjct 6668 TTGCGCTTGAACTCG--------GTGACGAAGAACTCTACAAGACGATTATCAAAGTCTT 6719 Query 7467 CACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGT 7526 | ||||||| || ||||| ||||| ||||| || || || ||||| ||| ||||||| Sbjct 6720 CGCCACCCAGATGAGTATCGCCCGCCGTCGCCTTCACCTCGAAGATGCCTTCTTCAATCG 6779 Query 7527 TTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT 7586 | | || ||| ||||||||||| || || ||||| ||||| || || ||||| || Sbjct 6780 TAAGCAGCGAGACATCAAACGTCCCGCCTCCCAGATCAAAGATCAGCACGTTGTGCTCAC 6839 Query 7587 CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646 || | || ||| || || |||||||| || || || || || || ||||| || |||| Sbjct 6840 CGCCCTT---CTTGTCCAGCCCGTACGCAATGGCAGCAGCGGTCGGCTCATTGATGATAC 6896 Query 7647 GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706 | || |||||| ||||| |||| | || || ||||| ||||| || |||||||||| Sbjct 6897 GCAGCACGTTCAGCCCAGCGATAGCCCCGGCGTCCTTCGTGGCTTGGCGCTGCGAATCGT 6956 Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCG 7766 | || || || |||||||| || || || | | | |||| |||||||| || | || | Sbjct 6957 TGAAATACGCTGGGACCGTCACCACGGCATTCTTCACTTGCTTACCGATGTAAGCCTCGG 7016 Query 7767 CGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCG 7826 |||| ||| ||| ||| ||| ||||| || || ||||| || | | ||| ||| | Sbjct 7017 CGATCTCTCGCATCTTGACAAGCACCATGGACGAGATCTCCTCGGGCTGGAACGTTTTGG 7076 Query 7827 TTTCACCGTTAAAATCAACTTCAATCATG-GGTTTATCCGCAGCACCGGGGATAACCTTA 7885 |||| || || || || | | | || ||||| | | | | ||| | | || || Sbjct 7077 TTTCGCCCTTGAACCGCACCACCA-CTTGAGGTTTGTTCTCGGGGCCGCGAACCACTTTG 7135 Query 7886 TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGA 7945 ||| ||| | || || || || || | | ||| | |||||| | ||||| | | Sbjct 7136 AACGGCCAGTGCTTGATGTCCGACTGCACTTCTGCGTCGGTAAACTTGCGGCCGATCAAA 7195 Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 ||||| |||| || || ||||| | || |||||| || |||||||| || ||||| Sbjct 7196 CGCTTGACATCGAACACCGTGTTGTGGGCGTTCATAGCCACCTGGTTCTTGGCGGCGTCG 7255 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 ||||| ||||| || | ||| || || || || || ||||| || || || || Sbjct 7256 CCGATCAGACGCTCCGAGCT---CGTGAAGGCCACATAGGACGGGGTAGTGCGGTTGCCC 7312 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTT 8125 ||||| || || || || || |||||||| || ||||| ||||| |||||||| || || Sbjct 7313 TGGTCATTGGCGATGATCTCCACGCGGTCATTCTGCCACACGCCAACGCACGAGTAGGTC 7372 Query 8126 GTTCCTAAATCAATACC 8142 || || | |||||| || Sbjct 7373 GTGCCCAGATCAATGCC 7389 Score = 347 bits (384), Expect = 2e-90 Identities = 793/1180 (67%), Gaps = 29/1180 (2%) Strand=Plus/Minus Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 |||||| | |||||| || || || || || |||||||| |||||||||| || | Sbjct 1164 GGTCATGACACCACCGGCCGTCTCCAGACCCAGCGACAGAGGCGTCACGTCCAGCAGCAG 1105 Query 6985 CAGGTCTTGAACAGATTCGTTCC------CTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038 || ||| || ||| || || | | | || | | |||||| || || ||||| Sbjct 1104 CAAGTCCTG--CAGCTT-GTCCGACGAGTCGTTGCCGCTCAGGATGGCCGCCTGCACCGT 1048 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || ||||| ||||| ||||| || ||||| |||| || || | || || ||||| || Sbjct 1047 GGCGCCGTACGCGACGGCCTCGTCCGGGTTGATCGACTTGTTGGGCTCCTTGCCGTTGAA 988 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 | ||||| | || || || | || ||||| || |||||||| || || | || | Sbjct 987 GAAGTCCGACAGCAGCTGCTGCACCTTGGGGATACGCGTCGATCCGCCCACGAGCACCAC 928 Query 7159 TTCATTCACTTTCGATTTATCGAT--CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 |||| ||| | || | | ||| ||| | ||| || || || || ||||| ||| Sbjct 927 CTCATGCACCT--GACTCTTGGATAGCTTGGCGTCACGCAGCACCTTCTCCACAGGCTCC 870 Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 || || ||||| | || ||||| ||||| || || || || || |||| | Sbjct 869 ATGGTCTTGCGGAAGTAATCTCCGCACAGATCCTCGAACCGCGCGCGCGTGATGGTCGAG 810 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 | ||| || ||||||||||| | ||| || || || ||| | |||| | ||| || Sbjct 809 TTGAAGTCCACGCCGTCGTACAGCGAGTCGATCTCGATGTACGCCTGTGTTGACGACGAC 750 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | ||| ||||| |||||||| |||||||| || | || | ||||| ||| |||| | | Sbjct 749 AGCGTACGCTTGGCGCGCTCGCACGCCGTGCGCAGCCGCTGCAGGGCGCGCTGGTT-CTG 691 Query 7397 GAA-ATATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTG-TCGA--AGGAGTC 7451 | | ||| || || | || || ||||| | || | |||| |||| ||| | Sbjct 690 CATCAGATCCTTGCGGTGCTCACATTGGAACTCCTGCACA-AAGTACTCGACCAGGCGGT 632 Query 7452 TCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGA 7511 | ||||| || || || ||||| || || || || ||||| || || || || |||| Sbjct 631 TG---TCGAAGTCCTCGCCGCCCAAATGCGTGTCGCCGGCGGTGGCCTTCACCTCGAAGA 575 Query 7512 TACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGA 7571 | || | || ||| | || | ||| ||||| || || || || ||||||||||| || | Sbjct 574 TGCCCTCCTCGATGCTCAAGAGCGACACATCGAAGGTGCCTCCGCCCAGGTCAAAGATCA 515 Query 7572 GTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 | ||||| ||| || | ||||| || || ||||| ||||| || || ||||| | Sbjct 514 GCACGTTGCGCTCGCCGCC---CTTCTTGTCCAGGCCGTAGGCGATGGCAGCGGCCGTGG 458 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 |||| || || ||||| || |||||| || ||||| | | || || || ||||| | Sbjct 457 GTTCGTTGATGATACGCAGGACGTTCAGACCGGCAATGGCGCCGGCGTCCTTGGTCGCCT 398 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | || ||||| ||||| |||||||| || ||||| | || |||| | |||| | ||| | Sbjct 397 GACGCTGCGAGTCGTTGAAGTAGGCGGGCACCGTGATCACGGCGTTCTTGACCTCCTTGC 338 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 ||| | | || || | || ||| ||| | || ||||| || || ||||| || | Sbjct 337 CGATGAAAGCCTCGGCCACCTCGCGCATCTTGATCAGCACCATGGACGAGATCTCCTCGG 278 Query 7812 CCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 | ||| || || || || || || | || ||| || || || | | || Sbjct 277 GCTGGAACGTCTTGGTCTCGCCCTTGAACTGCACCGTGATCTGCGGCTTGTCACCGGGAC 218 Query 7872 CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931 | | | | ||| ||| ||| | || || ||| | || ||| | || || |||| Sbjct 217 CCGACGTCAGCTTGAACGGCCAGTGCTTGATGTCGGCCTGCACCACCGGATCGGAGAACT 158 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | ||||| || ||||| || || || || ||||| | | |||||||| |||| Sbjct 157 TGCGGCCGATGAGGCGCTTGGCGTCGAACACCGTGTTGTGTGCATTCATGGCCACCTGGT 98 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 |||| || ||||| ||||| || ||||| ||||| || || |||||||| |||| Sbjct 97 TCTTGGCGGCGTCGCCGATCAGGCGTTC---CGAGTCCGTGAAGGCCACGTACGACGGGG 41 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 | || || || || |||||||| || || || || ||||| Sbjct 40 TGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACGCG 1 >seq30 Length=91483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 239/360 (66%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 22465 GAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAAAATACACCGTTTTACCCGCGT 22524 || || ||||| ||||| | | || || ||| | || || || ||||| ||||||| Sbjct 41990 GAACTGTACGGCAAAGTGCAAGCCACGCCGCAAGACGAGAAGACTCCGTTCCACCCGCGA 41931 Query 22525 TCACCATATGGGGTAGCTAAATTGATGGGATATTGG-GCGACAGTTAATTATAGAGAATC 22583 ||||| ||||| || || || | | | | ||| ||| || || || | || | Sbjct 41930 TCACCCTATGGTGTCGCGAAGCAGTTCGCCTTCTGGAGCGTG-GTGAACCATCGCGAGGC 41872 Query 22584 ATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCACGAATCACCGAGACGGGGTGA 22643 ||||| ||||| || ||||| || |||||||||| ||| ||| | || || Sbjct 41871 CTACGGCATGTTCGCCGTGAATGGAATTTTGTTCAACCATGAAAGCCCGCGGCGAGGACC 41812 Query 22644 AAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAATATCAGTGCAGGTAAACAAAA 22703 || |||||| || || || || || | | ||||| ||| |||| || | | || Sbjct 41811 AACCTTCGTCACTCGCAAGATTACTCGTGCTGTCGTGCGTATTCGTGCTGGCATGGAGAA 41752 Query 22704 ATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGGGGTCATGCACGCGATTACGT 22763 || | | |||| ||||| ||||||||||| || ||||| || || ||||| || || Sbjct 41751 GTGCCTCTTTGTTGGCAACCTCGATGCGAAACGCGACTGGGGCCACGCTCGCGACTATGT 41692 Query 22764 GAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAAGATTTTGTTATTGCAACAGG 22823 | | || |||||| || | || | |||| || || ||||| ||| | || || || Sbjct 41691 GGAGTGCATGTGGCGCATGCTTCAGAACGATACCCCAGAGGATTTCGTTGTCGCTACGGG 41632 >seq3706 Length=4050 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 8039 ACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTT 8098 |||||||| ||||| || || || || |||||||| || || || || ||||||||||| Sbjct 3 ACGTACGACGGGGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTC 62 Query 8099 TGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGA 8144 ||||| |||||||||||||| || || || || | || || |||| Sbjct 63 TGCCACACGCCGACGCACGAGTAGGTCGTGCCGAGGTCGATGCCGA 108 >seq495 Length=26838 Score = 93.3 bits (102), Expect = 5e-14 Identities = 202/299 (68%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 |||||||||||||| || | | ||| || || | || || | || || ||||| Sbjct 23066 TCTTCACCACCCAAATGAGAACTCCCAGCCGTGCCCAACACCTCGTAAATCTCTTCTTCA 23007 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | ||| ||||| | ||| || || ||||| ||||||| || |||||| | Sbjct 23006 ATGGCCACGAGCGACACATCCAGCGTGCCGCCGCCCAGATCAAAAACCAGCACGTTCCTC 22947 Query 7583 TCGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 | | || ||||| || || || || |||| ||| || || || || || | || | Sbjct 22946 TGGCCGGCTTTGGTCTTGTTCTCCAGTCCGTGCGCAATGGCAGCAGCGGTCGATTTACAG 22887 Query 7640 ATAATACGAAGACA-GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 | | || | || |||||||| |||| || | |||||||| |||| || ||||| Sbjct 22886 GTCAAGCG-TGCCACATTCAGGCCTGCAACAGCGCCGGCATCTTTGATCGCCTGCCGTTG 22828 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | | | | ||| |||| || | ||| || ||||||| | | || ||||| || |||| Sbjct 22827 AGCGTAGCTGAAGGAGGCAGGTATCGTCACCACCGCGTTCTTAACCTTCTTCCCCAGAT 22769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635083021466800