Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq374 104 3e-17 seq5612 98.7 1e-15 >seq374 Length=32324 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| || |||||||| || ||||||||| | || | |||||||||||||| || Sbjct 1737 GTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 1678 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||| || || ||||||| |||||||| ||| ||||||||||| Sbjct 1677 CTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGG 1628 >seq5612 Length=1235 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/197 (72%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 102122 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAGTCG-CGTTCCTTT 102176 |||| ||||||||| | ||||| | ||||||| || | | |||| ||| || Sbjct 788 TCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGTACC--- 732 Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236 | ||||| || | || || || || ||||| ||||| ||||| || || |||||| Sbjct 731 -CGGAGCGTCTGCTGGCGTTCGCTGCCGTGGAGGGCATCTTTTTCTCGGGCTCGTTCTGC 673 Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296 | || | |||||||||||||| || |||||||| ||||| ||||||| |||||||| Sbjct 672 TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTC 613 Query 102297 ATCTCTCGTGACGAGGG 102313 ||| || ||||| || Sbjct 612 ATCAGCCGAGACGAAGG 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620693749314400