Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq498 174 2e-38 seq94 105 8e-18 seq5612 96.9 4e-15 seq447 82.4 9e-11 seq374 82.4 9e-11 >seq498 Length=26695 Score = 174 bits (192), Expect = 2e-38 Identities = 1040/1647 (63%), Gaps = 44/1647 (3%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || ||||| || |||||| ||||| | ||||| || | ||| ||| Sbjct 5501 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTG 5442 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | ||||| | || | ||| | ||||||| ||| ||| | ||| Sbjct 5441 CTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACCG 5382 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || || |||| || ||| | | ||| || | || ||||| || ||||||||| Sbjct 5381 CGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 5322 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | ||||| | |||||| ||| || | || || | ||||| || | |||| || Sbjct 5321 TCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGATC 5262 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG 109713 ||| || || | ||||| || | || |||| || | | || | |||| Sbjct 5261 TGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTTG 5202 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 || || | || ||||| || || || ||| ||| ||||| | ||||||||| Sbjct 5201 TTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGC 5142 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 |||| |||| |||||||||||||| || || |||||||| ||||||||||| |||| Sbjct 5141 TCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACC 5082 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACC-CGCTCACGCATTGCGTC--CCAATCA 109890 || || ||| || ||||| | || || ||| || || | ||| | ||| | Sbjct 5081 AGCAGCGAGTTGCGAAGACCGT--GT-TTGACCACGTTCTCCTTGAGCGCCGCCCAGTTC 5025 Query 109891 TAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCA 109950 | |||| | || | || |||||| || || | | |||| Sbjct 5024 CAGAGACCCGAGGACGGGGTGACGCC---CCACATGTCGAACTGGAAGATCCCCTTGCTG 4968 Query 109951 GCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCC 110010 || || || |||| ||| ||||||| | || ||| ||| | ||| || | | Sbjct 4967 GCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTCCTTGGCAATCTCCATGGACGTC 4908 Query 110011 TCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAG---GCGAGACTCT 110067 || | || || | || || ||||| || || | || |||| ||| | || Sbjct 4907 TCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTC---TTGTTGAGCTCGCGGGCCTGC 4851 Query 110068 TCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAG 110126 || | ||||| | | || || | || | || | ||||| || ||||| || |||| Sbjct 4850 TCGCTCTCGAACGCGTAGTTCATGAGGA-TGAAGGCGTCCGCGAGGCCCTGGACGCCGAT 4792 Query 110127 ACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCG 110186 || |||||||| || |||||| || || || | ||||| || |||| Sbjct 4791 GCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGATAGTAGTTAAC 4732 Query 110187 GTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTA 110246 |||||||||| ||||| || ||||| ||| |||| || | |||||| | ||| Sbjct 4731 GTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTA 4672 Query 110247 ATCGAACGTTTTCGTC-TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGC 110305 |||||| |||| ||| || | ||||| || || | || || || |||| Sbjct 4671 GTCGAACACGC-CGTCGTCC------ACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGC 4619 Query 110306 ACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG---GAAC 110362 |||| | |||||| | ||||| |||| | || |||| |||| || | Sbjct 4618 ACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGC 4559 Query 110363 TCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCA 110422 | || || | ||||| ||| || || ||| |||| || ||||| ||||||| Sbjct 4558 GGATGGTG---CCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCA 4502 Query 110423 TGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGG 110482 || | || || || || |||| | | || ||||| ||| || | || ||| Sbjct 4501 TGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGC 4444 Query 110483 G--GACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAAT 110538 | || || |||| ||| | || || |||||||||| ||| | | |||||| Sbjct 4443 GTTGATGGTCTTGCGG--GCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAAC 4386 Query 110539 TCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATT 110597 || | || | ||| || | || || |||| || ||| ||||| | ||| || Sbjct 4385 TCGTCCCCCCAGCAC-TCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTT 4327 Query 110598 TCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTC 110657 || |||| || | ||||||||||||||| || | ||||| ||| |||| ||||| Sbjct 4326 GCCGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTC 4267 Query 110658 ACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATC 110717 ||| ||| | || | || ||||| ||| || |||| || || | | || Sbjct 4266 GCGGGCACGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTC 4207 Query 110718 CGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCC-TGGTT 110774 | |||||| || ||||| |||| |||| | ||||| || || |||| |||| Sbjct 4206 GGCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTC 4147 Query 110775 AACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACC 110834 || || || || ||| | ||||| || | ||||| || || || || | ||| || Sbjct 4146 CACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCC 4087 Query 110835 ATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACC 110894 || || || | ||| | || |||| ||||||| ||| || || || ||||| Sbjct 4086 GTTGGTGCCTCGAATGTAGCTGTTGGTGGCGCGAATGTTGTGCATGCTGATGCCGATACC 4027 Query 110895 ACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGA 110954 ||||||||||| || || |||| |||| || |||| ||||| || || || Sbjct 4026 CCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGA 3967 Query 110955 ATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATT 111014 || ||| |||| | ||| ||||| || |||| ||| ||||| |||||||| || || Sbjct 3966 GTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTT 3907 Query 111015 GAAGAGTGTAGGTGTCGCATGAATGAA 111041 || || || || ||||| || |||| Sbjct 3906 AAACAGCGTCGGCGTCGCGTGCGTGAA 3880 >seq94 Length=65164 Score = 105 bits (116), Expect = 8e-18 Identities = 337/514 (66%), Gaps = 23/514 (4%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | |||||||| || | ||||| Sbjct 19909 ATCTGCCGGTCGAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATGTCCGCGCGGTTC 19968 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || || | || ||| | || ||||| ||||| || || Sbjct 19969 GTACCAGCCAGCACCACCACACCT---TCACTCGAGTTAAAACCATCCATCTCGACCAGC 20025 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGC--CG 11665 | |||||| | ||| | ||||||||| |||||| || |||| | ||| || Sbjct 20026 AACTGGTTAAGCGTGTTTTCACGCTCGTCGTTGCCTCCCGAAAAGTTACC-CTTGCTACG 20084 Query 11666 AACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCAC 11725 | ||| | || || || || || || ||||| ||||| ||||| ||| || | Sbjct 20085 AGCGCGGG----CCACGGCATCGATTTCGTCAATGAACACGATGCACGGGGCGTTCGCGC 20140 Query 11726 GTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGA 11785 | |||| | ||| | ||||| ||||| || || ||||| ||||||||||| | || Sbjct 20141 GCGCCTCCTTGAACAAGTCACGCACACGGGACGGACCCACACCGACGAACATCTCGATGA 20200 Query 11786 AGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCG 11844 | | | | || | ||||| ||| || || | | ||||||||| |||| || Sbjct 20201 AATCCGAACCGGAGATGCTGAA-GAAAGGCACGCTGGCCTCACCAGCCGTGGCCTTCGCC 20259 Query 11845 AGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCA 11904 || ||||||||||||||||| || | || | || || || || ||||||||| ||| Sbjct 20260 AGCAGAGTCTTACCCGTACCGGGCGGGCCGACAAGCAGAGCACCCTTGGGGATCTTCGCA 20319 Query 11905 CC-ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTC 11963 || | ||| | | |||| | || ||||||||||||| |||| | |||| Sbjct 20320 CCGAGCTCC-GTGAACCGCTTCTGGTTGCGAAGGAAGTCCACAAACTCCATGATCTCCTT 20378 Query 11964 CTTGGCGGAGTCGATACCCTCAACATCGGTGAAA 11997 ||||| ||| | ||| | ||||| ||||| Sbjct 20379 TTTGGCCTCGTCCACACCAGCCACATCCTTGAAA 20412 >seq5612 Length=1235 Score = 96.9 bits (106), Expect = 4e-15 Identities = 185/269 (69%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || || ||||||||| || ||||| || ||||||||||| || | ||| Sbjct 596 CCTTCGTCTCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTC 655 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || || || |||||||||||||| ||||| Sbjct 656 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAAAAGATGCCCTCCACGGCAGCGAAC 715 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACT----TGTCGAACCACTTGAGAGCCCAGTT 119689 || | |||||||| | | | ||| ||| |||| |||||||||| ||||||| Sbjct 716 GCCAGCAGACGCTCCG-GGTACGACGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 774 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGC 119749 || || || | ||| |||| || | |||||| | || || ||||| || | Sbjct 775 CGCTTTCTTCTTGACGCACGGGATCGTCTCGATGGCACGCAGCAGGTGGTTCTTCTC--C 832 Query 119750 ACC--ATCCTTAATATATTTATCAATGAG 119776 | | ||||| || || |||||||||| Sbjct 833 ATCGTGTCCTTGATGTAGGTATCAATGAG 861 >seq447 Length=40481 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 ||||| || | || || || ||||| | ||||| || ||||| | ||||| | ||| Sbjct 23534 TTACCGCGCAACGGGAAGACGCCATAGTAGTCTCTGCCAACGACAGCAAGACCTCCCACA 23475 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT--G 168547 |||| ||| || || ||||| || || || | ||| || || || | || || | | Sbjct 23474 GCGACAGTCTTGGCGGAATCTCCTTCCGTGAGGATCAGGGTGCAGT--CCTTGCTCTTCG 23417 Query 168548 CCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 |||| ||||| | |||||||||||||| |||||||| || || Sbjct 23416 CCGTGCCAGCGTGGTTCGCATCGTCCAGCTTGGGGATGCCCGT 23374 >seq374 Length=32324 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/165 (72%), Gaps = 5/165 (3%) Strand=Plus/Plus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||| ||||| || ||||| || ||||||||||| || | ||||| ||||| ||||| Sbjct 1642 GATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT 1701 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 || || || || || ||||| ||||||||||| |||||| || | |||||||| Sbjct 1702 GGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTC 1761 Query 119648 AGCAAAAGGTCGAGA----CTTGTCGAACCACTTGAGAGCCCAGT 119688 | | | ||| | | |||| |||||||||| ||||||| Sbjct 1762 CG-GGTACGACGACACACGCGGGTCGCACCACTTGAGCGCCCAGT 1805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588929839006000