Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq498 196 6e-45 seq642 86.0 7e-12 >seq498 Length=26695 Score = 196 bits (216), Expect = 6e-45 Identities = 1100/1731 (64%), Gaps = 50/1731 (3%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| ||||||||||| || | ||||| ||||| | ||||| || | ||||||| Sbjct 5501 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTG 5442 Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCA 105715 || || || | ||| | || | ||||||||| |||| || ||| Sbjct 5441 CTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACCG 5382 Query 105716 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGA 105775 || | |||| || || | || ||||| |||||| |||||||| || ||| Sbjct 5381 CGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 5322 Query 105776 TTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATG 105835 | ||||| | ||| ||||| | | || || | || || || | || | || Sbjct 5321 TCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGATC 5262 Query 105836 AGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTG 105895 ||| || || | ||| | || | || |||| || || | || | |||| Sbjct 5261 TGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTTG 5202 Query 105896 TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGT 105955 || || ||| ||||| || || || | | || ||||| | ||||||||| Sbjct 5201 TTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGC 5142 Query 105956 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 106015 || | | | || || || || | ||| || || ||||| || || ||||| || |||| | Sbjct 5141 TCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACC 5082 Query 106016 AAAAGACTGTTACGAAGACCCTTTTCCTTGATG-CGTTC--CTTGAGAACATCCCAGTCG 106072 | || ||| |||||||| | || ||| ||||| |||||| | |||||| Sbjct 5081 AGCAGCGAGTTGCGAAGACCGTGTT---TGACCACGTTCTCCTTGAGCGCCGCCCAGTTC 5025 Query 106073 TAGTT----GAGCTTGGTTTCACCTTCCCACATATCAAATTG-AAGCACCCCTTG--GGA 106125 || ||| || | || ||||||| || || || ||| ||||||| || Sbjct 5024 CAGAGACCCGAGGACGGGGTGACGC-CCCACATGTCGAACTGGAAGATCCCCTTGCTGGC 4966 Query 106126 CGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA-GCCAATTCACA-GCTC 106183 || | || |||| || ||||| |||| || | ||| | | |||| || | | Sbjct 4965 CG---GCGAGCCCTGGAACGTCTCGTAGGGGCC--GAGCTCCTTGGCAATCTCCATGGAC 4911 Query 106184 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 106243 | ||| | || |||| || || || || ||||| || | ||| ||| | Sbjct 4910 GTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGC 4851 Query 106244 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 106303 || || || |||||| | || || | |||||||| || || || || | Sbjct 4850 TCGCTCTCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATG 4791 Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 106363 || || || | ||| ||||| || ||||| ||||| | |||||||| | || | Sbjct 4790 CCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGATAGTAGTTAACG 4731 Query 106364 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 106423 || ||||| ||| || || ||| || | ||| |||| || | ||||| | || Sbjct 4730 TCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTAG 4671 Query 106424 TCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 106483 || || || | || | || |||| || || || | || |||| ||||| Sbjct 4670 TCGAACACGC------CGTCGTCCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGCAC 4617 Query 106484 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTG---GAACTC 106540 || ||| ||| || |||||||| | | || |||| |||| || | Sbjct 4616 ACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGG 4557 Query 106541 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATG 106600 || || || | |||| ||||| ||| |||| ||| ||||||||||||||| Sbjct 4556 ---ATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATG 4500 Query 106601 TAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTG 106658 ||||| |||||||| |||| | | || || || ||||| | | ||| | || Sbjct 4499 AAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGCGCGTTG 4440 Query 106659 GTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 | | ||| ||| || ||||| ||||||||| ||||||| |||||||| | Sbjct 4439 ATGGTCTTGCG--GGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACTCGT 4382 Query 106719 CACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777 | ||| | || ||| |||| || || |||| || || ||||| | | ||| | || Sbjct 4381 CCCCC-CAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCG 4323 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-T 106836 |||| || ||||||||||| ||||| || | |||||| | | || || || | Sbjct 4322 TTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGG 4263 Query 106837 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 106896 ||| | || | |||| || ||||| || | || |||||||| | | || || Sbjct 4262 GCACGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCGGC 4204 Query 106897 GTGCCATGGCTCAAGATAGACTGCGATAGAT-CCCTTTCG---ACGCCCAGCTTGATTTA 106952 |||||| ||||| || |||| |||| || | ||||| || | || | || | | Sbjct 4203 GTGCCAGGGCTCGAGGTAGATGGCGA-AGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCA 4145 Query 106953 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 107012 | || || || ||| |||| || ||||| ||||| || || || || | || || | Sbjct 4144 CGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCGT 4085 Query 107013 TTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 | || || ||||| || | || |||| | | | || ||| || || |||||| Sbjct 4084 TGGTGCCTCGAAT-GTAGCTGTTGGTGGCGCGAATGTTGTGCATGCTGATGCCGATACCC 4026 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 || |||||||| ||||| || |||| | | || || |||||||||| | ||| ||| Sbjct 4025 CCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAG 3966 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 || |||| |||| | |||||||| ||||| |||||| | || || || || || Sbjct 3965 TCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTA 3906 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAA 107250 || || || || || ||||| |||| | || | || ||||| ||||| ||||||| Sbjct 3905 AACAGCGTCGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTCCAG 3847 Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACAT 107301 | | | ||||| || ||||||||| | ||||| ||||||| ||| Sbjct 3846 CGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCAT 3796 >seq642 Length=21628 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 15775 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 15834 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 15835 CCGGTAGGAGCT 15846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589934560254800