Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2085 197 1e-45 seq507 107 2e-18 >seq2085 Length=5363 Score = 197 bits (218), Expect = 1e-45 Identities = 455/678 (67%), Gaps = 27/678 (4%) Strand=Plus/Minus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| ||||| || || |||| ||| || ||||| || ||||| | ||| Sbjct 5043 AGCTGCTTCTGGAGCGGCTCGACATGATTCAGATACACGTGGGCATCTCCAATAACGTGA 4984 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 ||||||||||| || | | || | || || || | || ||| || | | |||| Sbjct 4983 ACAAACTCTCCAGGCTTCAATCCAGCCACCTGCGCAACCAGTCGCGTAAGCAATGCGTAG 4924 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 || ||||| || || || || || || |||||||| |||| | |||||| | ||| || Sbjct 4923 CTAGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 4864 Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 || ||||| |||||| |||||| ||||| || | |||||||||| || || ||||| Sbjct 4863 GAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 4805 Query 30031 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT 30086 | || || || || ||||| || ||| | |||||| | ||| ||||| Sbjct 4804 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATGCGGCGGTCCGTCGGGTT 4748 Query 30087 GTTCCTGA---TGAGGT---CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30140 | | | || || || | ||| ||||| ||||| ||| || | ||| Sbjct 4747 CGTGCGCAGCTTGTGGATAACCCCCGCG------AGCTGGTCCACGCCCTGGCCAGTGTA 4694 Query 30141 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30200 || || |||||||||||||| || || ||||||| ||||||||| ||||| ||||| Sbjct 4693 ATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATGCCGCCACTGGAAGCCGTAGACCGG 4634 Query 30201 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAAC 30259 ||| ||||| ||| | || | | || | ||||| | |||||| | | || | || Sbjct 4633 TCCGAGGTCGCCCACCTCTC-GCGCCTGCAGCCCTCGACTGTCCAGATACTCGCGCGACG 4575 Query 30260 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 30319 | ||| |||||||||| | | |||||| ||| | | | | ||| || | Sbjct 4574 CATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCGCTGGTGTCGCCGC 4515 Query 30320 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30379 ||| |||||||||||||||||| | ||| | ||| || || | |||||||||||| | Sbjct 4514 TGATGAACCACAGCAGCTCCTCGGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCA 4455 Query 30380 GGGGAAAC----TGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACT 30435 | || ||| |||||| |||||| | || ||| | || || || |||| Sbjct 4454 GCGGGAACACGTTGTCCC-TGAGGCTGAACCGCATCTGCGCGCCGAAGACCGACAGCGTG 4396 Query 30436 CCCGTGCCCGTCCTGTCT 30453 ||||| ||||| | |||| Sbjct 4395 CCCGTCCCCGTGCGGTCT 4378 >seq507 Length=29800 Score = 107 bits (118), Expect = 2e-18 Identities = 206/304 (68%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 48331 CCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTCAC 48390 |||||||| | || || ||||| | ||||||| | |||||| || | | ||| | Sbjct 14889 CCACCTCCTGCACCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCC 14830 Query 48391 CCCTCTCGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCC 48450 | | || || | ||| | | | | ||| ||||| || ||||| | |||||| | Sbjct 14829 CGCGCTGCACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGC 14770 Query 48451 TGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCCGG 48510 |||||||| ||| | ||| || || || ||| || || || || || |||||||| | Sbjct 14769 GGTAGTCGGCGTCGATCACGCCCGCGCCCGTGTCGATGAACTTCTTGAGCGCCAGGCCAG 14710 Query 48511 ACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTTTA 48570 | | || ||||| | ||||| ||| | ||||| || ||||||||||||| | Sbjct 14709 AGCGCGGCGCCACGCGCGCGTAGCAGCCGGTGGGCACGGCGACCACCAGGTCCGTCTTGA 14650 Query 48571 CCAGGGCCCTGCCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACCCG 48630 | ||| || ||||| | ||||| |||| | || ||||||| |||||| |||| Sbjct 14649 CGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAGGCGGCCGACAGGTCCAGGCCCG 14590 Query 48631 CGGC 48634 |||| Sbjct 14589 CGGC 14586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408586375230710