Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq498 443 4e-119 seq5612 264 2e-65 seq374 237 3e-57 >seq498 Length=26695 Score = 443 bits (490), Expect = 4e-119 Identities = 1211/1833 (66%), Gaps = 75/1833 (4%) Strand=Plus/Minus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||||||||| || ||||| |||| ||| | |||||| | ||||| || Sbjct 5501 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT- 5443 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGGGACTGACTCT 212712 ||| | | || |||| ||| ||||| | ||| || |||||||||| Sbjct 5442 ----GCTGA-TGGTCGGGTC--------GGC---GATGTGGATGTTGAGCGACTGACTCT 5399 Query 212713 GGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCC 212772 || ||| | | | | ||| || | || ||| | | | |||| || ||||| Sbjct 5398 GGCAAATGTAGGCACCGCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCC 5339 Query 212773 ACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACC 212832 |||| |||||| | | || |||| || || |||| | | | |||||||| || | Sbjct 5338 ACACCGTCTTGTACTTCTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGC 5279 Query 212833 CCCTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCA 212889 | | || | |||| ||| ||||| ||| |||||| |||| | || Sbjct 5278 CGCCGTC---GTTCAGGATCTGATTGCGCACGTCGGGTGTCCAGATGCCCA-GCTCAATG 5223 Query 212890 GGCAC-TTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGG 212948 || | || | ||||| ||| || ||| ||| ||||| | ||||| | | | | Sbjct 5222 AGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTG 5163 Query 212949 TAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTG 213008 || | ||| || ||||||||||||||| ||||||||| || || ||||| || ||| Sbjct 5162 TACATGTTGGACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAA 5103 Query 213009 GCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC 213068 || ||||||||||| |||||||| || ||| | | ||||| | | | | | | Sbjct 5102 GCCGTGGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCC 5043 Query 213069 CGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCA 213128 ||| | ||||||| ||| || || || | || ||| ||||||||| Sbjct 5042 TTGAGCGCCGCCCAGTTCCAGAGACCCGA--GGACGGGGTG----ACGCCCCACATGTCG 4989 Query 213129 AACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCC 213188 ||||| ||||| || ||||| | || ||||||| | | ||||||||| ||||| Sbjct 4988 AACTGGAAGATCCCCTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTCC 4929 Query 213189 TTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTG 213248 ||||| | ||| ||||| || | ||| ||||||||||| || || || || | | || Sbjct 4928 TTGGCAATCTCCATGGACGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTG 4869 Query 213249 TTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCC 213308 ||||||| ||||| | | ||| | ||||| | ||| | || || Sbjct 4868 TTGAGCTCGCGGGCCTGCTCGCTCTCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGCG 4809 Query 213309 AGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTC 213367 || |||||||| |||||||||||||| | ||| | || ||| |||||| | || ||| | Sbjct 4808 AGGCCCTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGC-CTCGGC 4750 Query 213368 CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGAC 213427 || ||| || |||| |||||||| |||||||||||||||||| |||| |||||||| Sbjct 4749 CACGGGATAGTAGTTAACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGAC 4690 Query 213428 ATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGC 213487 | | || | || || | ||||||| ||||| | ||| |||| ||||| || Sbjct 4689 CTCGTAGAGTTTCTGGTAGTCGAACACG------CCGTCGTCCACGAACTTGGGCAGCGC 4636 Query 213488 GATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGT 213547 | | |||||||||||| ||||||||||| | | | ||||||||||| | |||| Sbjct 4635 CACGGAGGCCAGGTTGCACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCA 4576 Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA 213607 ||||||||||||| | ||||||||||| |||||||| ||||| ||||| |||||| | Sbjct 4575 GCACAGGTTGCTGGAGCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGC 4516 Query 213608 ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCA 213667 ||||||||||||||| |||| || ||||| | ||| | |||| || | ||| Sbjct 4515 GTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA 4456 Query 213668 GAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGT 213726 || | | || |||| | || | | ||| | | || |||||||| |||| Sbjct 4455 CAGCTGCTGCGCGTTGA----TGGTCTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGT 4400 Query 213727 AGA-GCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCC--CGGACAGGATGCGGGAC 213783 ||| |||| | || |||| |||||| | || || || || | | | ||| | Sbjct 4399 AGAGGCTC-TCAAACTCGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTCGTT--GGGGC 4343 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 | | | ||||| | |||| | || | || |||||||||||| || ||||||| Sbjct 4342 AGAACAAACTCCACTTGCCGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACA 4283 Query 213844 GCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGAT 213900 ||||| ||||||||| | || | | ||||| || ||| |||||||| | Sbjct 4282 GCGCGTAGAACAGGTCGCGGGCACGGTGCAGCTCGT---TGCCGTGGTTCTTGCGCAGGT 4226 Query 213901 CTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC 213960 | || || || || | ||| |||||||| ||||| | ||||||||| ||| |||| | Sbjct 4225 CCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGC 4166 Query 213961 TCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTA 214017 ||| ||||||||||||||| || |||| |||||| | |||||| | ||| | Sbjct 4165 GCTTGCCGCCGCCCTGGTCCACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGA 4106 Query 214018 CCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGC 214077 | |||||||| |||||||| || || || | || ||| | | |||| Sbjct 4105 TGATGCCGTTGGAGGAGCCGTTGGTGCCTCGAATGTAGCTGTTGGTGGCGCGAATGTTGT 4046 Query 214078 TCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCT 214137 |||| || || || || || || |||||||||| |||||| || | | || | Sbjct 4045 GCATGCTGATGCCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGT 3986 Query 214138 CCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGG 214197 | ||| || | ||| ||| || | | || | ||||||| || ||||| | Sbjct 3985 CATAGATACCCTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCG 3926 Query 214198 GCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGA 214257 | | | || || | ||| || ||||| || | || || | | ||||| | || | Sbjct 3925 GACGCGGCGTTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAACTTCTGCGACA 3866 Query 214258 GGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC- 214316 |||| ||| |||||||| | | |||||||| ||||||||| || || ||| Sbjct 3865 TGAGCTCGTACGTCTCCAGCGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGC-CACG 3807 Query 214317 CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGG 214370 | ||| | ||| ||||| || | ||| | |||| ||| || || ||| Sbjct 3806 CGCATAATCATTTGCTGCGGACGCTCCA--CCACCTT----GCCGTTTACGCGGAAGAGG 3753 Query 214371 TAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 ||| |||||| || || || ||||| |||||| Sbjct 3752 TAGCCGCGCTCGAGTGTTTTAAACCCGAAGTAG 3720 >seq5612 Length=1235 Score = 264 bits (292), Expect = 2e-65 Identities = 513/753 (68%), Gaps = 11/753 (1%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | |||||||||||||| ||||| |||| || |||||| | ||||| Sbjct 289 GTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 348 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | || ||||| | ||||||| | Sbjct 349 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAGTGAGTACAGCAGGCG 408 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | ||||||| | ||||||||| ||||| ||| Sbjct 409 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCAATGAGCTCCAC 468 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 |||| | | | ||||| | ||| ||| ||| || || | ||| |||| | Sbjct 469 AGGCAGCGAATCGCACACGAACTCGTGCTCAATCACCACCGCGTCGCGCACGATCTCGTG 528 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| || | | |||||| | | |||| | || | | ||| || ||||| Sbjct 529 CACGCGGCTTTCGGGCAGCTTGTTG---ACGAGCTTCGAGTACATGAGGCACGCGAAGTC 585 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| |||||||| |||||||||||| |||| ||||||| ||||||||||||| Sbjct 586 CGTGTGCATACCTTCGTCTCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 645 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| ||||| |||||||||||||| Sbjct 646 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAAAAGATGCCCTCCAC 705 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 || |||||||| || | ||| | | || | | || | | | ||| | Sbjct 706 GGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTCGCGGGT-CGCACCACTTGA 764 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCT 48380 ||||||||| || |||||||||| ||| || |||||||| ||||| || | || | | Sbjct 765 GCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCGATGGCACGCAGCAGGTGGT 824 Query 48381 TGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGT 48437 | ||| | |||| | ||||| | |||||||| | ||||| ||| | || Sbjct 825 TCTTCTCCATCGTGTCCTTGATGTAGGTATCAATGAGCAGC---GAGTACACCTCGGCGT 881 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | ||||| || ||||||||||| ||||||||| | | |||| ||||||||||| Sbjct 882 GGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGACCTCGGGCACCTGCACTT 941 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | || ||| || ||| ||||| || || || || || || || ||||||| Sbjct 942 CGTTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGG 1001 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGT 48590 | || || || || | ||| |||||||||| Sbjct 1002 CCAGCACGTGCTTGATGAAGAACCGCTCGTTGT 1034 >seq374 Length=32324 Score = 237 bits (262), Expect = 3e-57 Identities = 556/837 (66%), Gaps = 9/837 (1%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | ||||| | ||||| Sbjct 1321 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCAT 1380 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | || || |||| | | || ||| | Sbjct 1381 CCAGTCGAACGGGTTCTTCACGTTGTAGATCTTTGGCACACCCAGCGAGTACAACAGACG 1440 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | ||||||| | ||||||||| || || ||| Sbjct 1441 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCAC 1500 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | ||||| | ||| ||| ||| || || | |||||||| | Sbjct 1501 AGGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAATCTCGTG 1560 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | ||||| ||| ||||| || | | ||| || ||||| Sbjct 1561 CACGCGGCTCTCCGGCAGCTTGTTCACCAG---CTTGGAGTACATGAGGCACGCGAAGTC 1617 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| || ||||| |||||||| ||| |||| ||||||| || |||||||||| Sbjct 1618 CGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAG 1677 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| |||||||| ||||||||||| Sbjct 1678 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCAC 1737 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCAGGA 48318 || |||||||| || | ||| | | || | | | ||| | ||| Sbjct 1738 GGCGGCGAACGCCAGCAGACGCTCCGGGTACGACGACACACGCGGGTC---GCACCACTT 1794 Query 48319 AAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTT 48378 |||||||||| || |||||||| | ||| || |||||||| || || || | || | Sbjct 1795 GAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCGATCGCGCGCAGCAGGTG 1854 Query 48379 CTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTG 48438 | ||| | |||||| | || || || |||| | ||||| ||| ||||| Sbjct 1855 GTCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTG 1914 Query 48439 CACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTC 48498 | ||||| || ||||||||||| ||||||||| | ||||| |||||||||||| Sbjct 1915 GATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACTTC 1974 Query 48499 TGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGC 48558 || ||| || ||| ||||| || || || || || ||||| ||||| || Sbjct 1975 ATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACAATACCGTCGCTCGCAGCGAAGAACGC 2034 Query 48559 AAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTC 48618 || || || || | ||| |||||||||| || || |||| ||| | ||| Sbjct 2035 CAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTCCTTGAGGTC 2094 Query 48619 TTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 | ||||||||| || || | |||||||| || || || || |||||||| Sbjct 2095 GTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTACAT 2151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931459791116800