Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq498 259 9e-64 seq5612 208 1e-48 seq374 205 2e-47 >seq498 Length=26695 Score = 259 bits (286), Expect = 9e-64 Identities = 658/996 (66%), Gaps = 29/996 (3%) Strand=Plus/Minus Query 221504 AAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCG 221563 ||| |||| || || ||||| || ||||| |||||||| | ||| | | ||||||| | Sbjct 4820 AAGGCGTCCGCGAGGCCCTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGACTTG 4761 Query 221564 GCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATG 221623 ||| || | ||||||||| |||| |||||||| | ||||||||||| | || | Sbjct 4760 CGCGCCTCGGCCACGGGATAGTAGTTAACGTCGATGACCTTGTTGAGGTTGCGGGTCACC 4701 Query 221624 ACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGG 221683 || || |||||| || ||||||| | |||||| |||||||| Sbjct 4700 ACCTTGGTGACCTCGTAGAGTTTCTGGTAGTCGAACAC---------GCCGTCGT----- 4655 Query 221684 GGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTG 221743 |||| || | || || ||| ||||||||| ||||||||||||||||| | Sbjct 4654 ----CCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGCACACGGCCACCTCGTCGGGG 4599 Query 221744 TTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTG 221803 || |||| || | ||| || ||||||||| | |||||| || |||| | Sbjct 4598 GACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGGATGGTGCCGAGGTTCTGC 4539 Query 221804 TGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGC 221863 || || |||||||| ||||| ||||||||||||||||| ||||| |||| ||||| | | Sbjct 4538 TGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATC 4479 Query 221864 TGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACC 221922 || || |||| || | ||| || | ||| ||| | | ||| | | | || Sbjct 4478 TGCGCGTCCAGGATGGCGAACCACAGCT-GCTGCGCGTTGATGGTCTTGCGGGCGCGGCC 4420 Query 221923 CTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAG 221982 |||| | || ||| | ||||| | ||||||| || || | ||||| || Sbjct 4419 CTCGCGC---TCGTACTTGTCGTAGAGGCTCTCAAACTCGTCCCCCCAGCACTCGTAGAG 4363 Query 221983 GCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCAT 222042 || || | | ||| || | || |||||| | |||| | | || | || ||| Sbjct 4362 CCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCGTTGGCCTCCACGCGCTTCAT 4303 Query 222043 GAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCC 222102 ||| ||||| || | ||||||||| | || || || | || || ||| ||| ||| Sbjct 4302 GAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGGGCACGGTGCAGCTCGTTGCC 4243 Query 222103 GTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGAC 222162 || ||| || | ||| |||| ||||| || | ||| |||||||| ||||| || |||| Sbjct 4242 GTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCGAGGTAGAT 4183 Query 222163 GGCCAGAGC-GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGA 222221 ||| | ||| ||| |||||| ||| ||||| ||||| || || |||||| Sbjct 4182 GGCGA-AGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTACCGGGCCGTGTCGTTGA 4124 Query 222222 AGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCAC 222281 | | ||| || | || | | |||||||| ||||||||||| |||||| Sbjct 4123 ACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCGTTGGTGCCTCGAATGTAGCTGT 4064 Query 222282 CGCCGGCCCTCAGGT--TACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCAT 222339 | ||| | | || | | || | ||||||||||| || || || ||||| Sbjct 4063 TGGTGGCGCGAATGTTGTGCATGCTG--ATGCCGATACCCCCCGCCCACTTGGAGATGCA 4006 Query 222340 GGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAG 222399 |||||| |||||| ||||| ||| ||||| || ||||| |||| | | || || Sbjct 4005 GGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAGTCGTCCTGCATGGCCAATAG 3946 Query 222400 AAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTG 222459 || || || |||| ||| | | | | ||||||||||||||| || | ||||| Sbjct 3945 GAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAAACAGCGTCGGCGTCGCGTG 3886 Query 222460 TGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 || ||| | | ||||| || ||||||||||| Sbjct 3885 CGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTC 3850 Score = 107 bits (118), Expect = 4e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 ||| |||| | || || ||||||||| | ||| || || | ||||| | | | | Sbjct 5222 AGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTG 5163 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 |||| ||| || ||| | || |||||| |||||||||||| |||||||| |||||| Sbjct 5162 TACATGTTGGACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAA 5103 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 || ||||||||||| ||||||||||| |||||| || ||| Sbjct 5102 GCCGTGGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCG 5061 >seq5612 Length=1235 Score = 208 bits (230), Expect = 1e-48 Identities = 492/739 (67%), Gaps = 21/739 (3%) Strand=Plus/Minus Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 ||||| ||||| |||| ||||| || ||| || || || ||||||||||| ||| | Sbjct 1016 TCAAGCACGTGCTGGCCTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACCTGGCCA 957 Query 25649 AGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGA 25705 || |||| || ||||||||| ||| |||| | || |||||||| ||||||| Sbjct 956 TGAACTTCAGCAACGAAGTGCAG---GTGCCCGAGGTCCGCTGCTTCTACGGCTTCCAGA 900 Query 25706 TGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACA 25764 | |||||||| || | ||| | |||||||| | ||| | ||| || ||||| | Sbjct 899 TCGCCATCGAGAACATCCACGCCGAGGTGTACTCGCTGCTCATTGAT-ACCTACATCAAG 841 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 ||| |||| | | ||| | ||||||||||| || || || |||||| | Sbjct 840 GACACGATGGAGAAGAACCACCTGCTGCGTGCCATCGAGACGATCCCGTGCGTCAAGAAG 781 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCT 25883 || |||| ||||| | |||||| | || | ||| | | ||| ||||| || Sbjct 780 AAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGC-GAGTGTCGTCGTACCCGGAGCGTCT 722 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCT 25942 | | || || ||||| |||||||||||||||||| || ||||| ||| ||||||||| Sbjct 721 GCTGGCGTTCGCTGCCGTGGAGGGCATCTTTTTCTCGGGCTCGTTCTGCT-CCATCTTCT 663 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||||||| || || |||||| || ||| ||| || ||||||||||||||| | | Sbjct 662 GGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGAG 603 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 |||| ||| | |||| || || || ||||| | ||| || | | | || || Sbjct 602 ACGAAGGTATGCACACGGACTTCGCGTGCCTCATGTACTCGAAGCTCGT----CAACAAG 547 Query 26063 CTTCTCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 || | | | || | ||| || ||| | || || |||| ||| ||| | ||||| Sbjct 546 CTGCCCGAAAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGGTGATTGAGCACGAGTTC 487 Query 26122 CNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATAC 26181 | ||||||||| |||||| |||| ||| Sbjct 486 GTGTGCGATTCGCTGCCTGTGGAGCTCATTGGCATGAACTCGGCGCTCATGTGCCAGTAC 427 Query 26182 ATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACG 26241 || |||| |||||||||| ||||||| | ||||| | ||| |||||| ||| Sbjct 426 ATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGCGTGTCCAAGATCTACA--ACG 369 Query 26242 CC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 | ||||||||||||| ||||| | || ||| || | || |||||||||||||||| Sbjct 368 TCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTTG 309 Query 26300 AAAAGAGGGTCGGCGACTA 26318 | ||| | || ||||| || Sbjct 308 AGAAGCGCGTGGGCGAGTA 290 >seq374 Length=32324 Score = 205 bits (226), Expect = 2e-47 Identities = 555/846 (66%), Gaps = 17/846 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || |||| Sbjct 2157 TGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 2098 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| || | | |||||| | || ||||| ||||| Sbjct 2097 CACGACCTCAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 2038 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || || || ||||| ||||||||||| ||| | || |||| | Sbjct 2037 CTGGCGTTCTTCGCTGCGAGCGACGGTATTGTGAACGAGAACCTGGCCATGAACTTCAGC 1978 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | ||||||||| |||||| || |||||||| |||||||| |||||||| || Sbjct 1977 AATGAAGTGCAGGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAAC 1918 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGAG 25776 | ||||| |||||||| | ||| ||||| |||||||| | |||| || ||| Sbjct 1917 ATCCACTCGGAGGTGTA---CTCGCTGCTGATCGACACGTACATCAAGGACGCCGTGGAG 1861 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || | ||| | | || |||||| || || || | |||| ||| |||| ||| Sbjct 1860 AAGGACCACCTGCTGCGCGCGATCGAGACGATCCCGTGCGTGAAGAAGAAAGCGCACTGG 1801 Query 25837 GCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 || | |||||| | | | || | | | ||| ||||| ||| | || || || Sbjct 1800 GCGCTCAAGTGGTGCGACCCGCGTGTG-TCGTCGTACCCGGAGCGTCTGCTGGCGTTCGC 1742 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 || ||||||||||| || ||| || || || ||| ||||||||||||||||| || Sbjct 1741 CGCCGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGC-TCCATCTTCTGGCTCAAGAAGC 1683 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || |||||| || ||| ||| || |||||||| |||||| | ||||||||| | | Sbjct 1682 GCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGTATGC 1623 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGA 26074 ||| || || || ||||| | ||| | | | || | || || || | |||| Sbjct 1622 ACACGGACTTCGCGTGCCTCATGTACTC---CAAGCTGGTGAAC-AAGCTGCCGGAGAGC 1567 Query 26075 C-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133 | ||| || || | || || |||| ||||||| | ||||| Sbjct 1566 CGCGTGCACGAGATTGTGCGCGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGACTCG 1507 Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193 | ||||||||| |||||| |||| ||||| |||| ||| Sbjct 1506 CTCCCTGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTG 1447 Query 26194 GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGA-CTCTACAGTACGCCTAACCCGTT 26252 ||||||| |||| ||| | |||||| | |||| | |||||| | |||||||| Sbjct 1446 GCCGACCGTCTGTTGTACTCGCTGGGTGT-GCCAAAGATCTACAACGTGAAGAACCCGTT 1388 Query 26253 CGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGG 26312 ||||| ||||| | || || | | || |||||||||||||| || ||| | || || Sbjct 1387 CGACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGG 1328 Query 26313 CGACTA 26318 ||| || Sbjct 1327 CGAGTA 1322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928772001788800