Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq498 159 4e-34 >seq498 Length=26695 Score = 159 bits (176), Expect = 4e-34 Identities = 422/630 (67%), Gaps = 11/630 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| | ||||| || || | ||||||||| || ||||| | | | Sbjct 3787 CCGCAGCAAATGATTATGCGCGTGGCGCTGGGCATCCACAAGGCCGACATCCAGGCCGCG 3846 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||||| ||||| ||||| || | || | |||| ||||| || || || || || Sbjct 3847 CTGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCGACGCCGACGCTGTT 3905 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 || || || || || | |||||| ||||| |||||||| | |||| |||| || Sbjct 3906 TAACGCCGGAACGCCGCGTCCGCAGCTGTCCTCCTGCTTCCTATTGGCCATGCAGGACGA 3965 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| | |||||||||| || || | | |||| || ||||| |||||||| || Sbjct 3966 CTCCATCGAGGGTATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCGGG 4025 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 75509 |||||| || || ||| || | | | |||| || | || ||||| || || | Sbjct 4026 GGGTATCGGCATCAGCATGCACAACATTCGCGCCACCAACAGCTAC-ATTCGAGGCACCA 4084 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || || || || ||||| ||||| || |||| ||| || || || | Sbjct 4085 ACGGCTCCTCCAACGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGGTACG 4144 Query 75570 TAAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | ||| ||| |||||||| | |||| ||||| | || || ||||| | Sbjct 4145 TGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCTTCGCCATCTACCTCGAGCCCTGGCACG 4204 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 |||| | | |||||||| || | || ||||| || |||| | || | ||| Sbjct 4205 CCGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA-GCTGCACCGTGCC 4263 Query 75687 -GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || || || | | |||||| | || ||||| ||||||||||| || |||| Sbjct 4264 CGCGACCTGTTCTACGCGCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTGGAGGCCAAC 4323 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTGA 75804 || | ||| | | ||||| || || |||| || || |||| ||| || | ||| || Sbjct 4324 GGCAAGTGGAGTTTGTTCTGCCCCAACGAGGCCCCCGGGCTCTACGAGTGCTG-GGGGGA 4382 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGA 75834 |||||||| ||||||| ||||| || Sbjct 4383 CGAGTTTGAGAGCCTCTACGACAAGTACGA 4412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596522843857600