Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_021306.1 Length=75736 Score E Sequences producing significant alignments: (Bits) Value seq381 159 2e-34 >seq381 Length=31917 Score = 159 bits (176), Expect = 2e-34 Identities = 335/496 (68%), Gaps = 5/496 (1%) Strand=Plus/Plus Query 65221 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 65280 ||| | |||||| |||||||| || | ||| | | ||||||||||| ||||| || || Sbjct 25546 CGCATTCATCGATGCTGAGCATGCCATTGACGCCCATTACGCCAAGGCTCTCGGCGTCGA 25605 Query 65281 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 65340 | ||||| || || ||||| ||| | ||||| | || || ||||||| || Sbjct 25606 CATCGACGCGCTGTACGTCTCGCAGCCCGACTCGGGCGAAGAAGCTCTTGAGATCGCCGA 25665 Query 65341 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 65400 | ||| ||| ||| || | | || | |||| || | ||| |||||| || ||||| Sbjct 25666 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGT 25725 Query 65401 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 65460 |||||| || ||||| ||||| || || || ||| || | | ||||| ||||| || Sbjct 25726 GCCGCGAGCGGAGCTGGAAGGTGAAATGGGCGACCAGCAGATTGCGCTGCAGGCGCGACT 25785 Query 65461 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC-ACGCTGACGC 65519 |||| ||||| |||| ||||| || || | | |||| ||||| | || | Sbjct 25786 CATGAGTCAGGCGCTGCGGAAGCTGACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTA 25844 Query 65520 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCA 65579 ||| | |||||| | ||| ||||| | |||| | || ||| | ||| | Sbjct 25845 TCTTCCTGAACCAGATCCGCCAGAAGGTTGGCA---TTATCTTCGGATCTCCTGAGGTGA 25901 Query 65580 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 65639 | | ||||||| || ||| | | ||||| || || || |||| | ||||| | Sbjct 25902 CGTCAGGCGGCACTGCCTTGCGCTATTACGCGTCTGTGCGGTTGGACATTCGTCGTAAGA 25961 Query 65640 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 65699 | || |||||||| || ||| |||||||||| || ||||||||| | ||||| Sbjct 25962 CGGCCATCAAGGAAGGTGACCAGGTTGTCGGCAACGAGACGGTGGTGAAGGTGGCCAAGA 26021 Query 65700 ACAAGCTGGCCCCGCC 65715 ||||||||||| |||| Sbjct 26022 ACAAGCTGGCCTCGCC 26037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242211889812590