Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq498 147 2e-30 seq14 96.9 3e-15 seq54 93.3 4e-14 seq710 82.4 7e-11 >seq498 Length=26695 Score = 147 bits (162), Expect = 2e-30 Identities = 891/1409 (63%), Gaps = 69/1409 (5%) Strand=Plus/Minus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || ||||| || |||| | || | || |||||||||| || || || ||| Sbjct 5219 TCCTTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTAC 5160 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| ||| | ||||| | || |||||||| || || ||||| ||||||| || Sbjct 5159 ATGTTGGACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCC 5100 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATT-CGTTC--C 138660 || |||||| ||||||| || || || || | |||||| |||| ||||| | Sbjct 5099 GTGGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGT---TTGACCACGTTCTCC 5043 Query 138661 TTGAGCGACGACCAGTCCCACAAATC---GCTAGGTTTTTTGTTCCACATATCGTACTGT 138717 ||||||| || ||||| ||| | | | | || | | |||||| ||| |||| Sbjct 5042 TTGAGCGCCGCCCAGTTCCAGAGACCCGAGGACGGGGTGACGCCCCACATGTCGAACTGG 4983 Query 138718 AACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCC 138777 || || ||| || || || ||| | | ||| ||||| || | ||| | || Sbjct 4982 AAGATCCCCTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTCCTTGGCA 4923 Query 138778 AACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGC 138837 | ||| || || ||||| || | ||||| || || ||| || | || |||||| Sbjct 4922 ATCTCCATGGACGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGC 4863 Query 138838 AATCGGGCCTCGGCGCTCTCGTACGG------CATGCGGAGCATCGTGAACGCGTCGGCC 138891 ||||||| |||||||| ||| |||| ||| |||| ||||| || Sbjct 4862 TCGCGGGCCTGCTCGCTCTCGAACGCGTAGTTCATGAGGA------TGAAGGCGTCCGCG 4809 Query 138892 AGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC 138950 || || || ||||| | |||| ||||| ||||||| || ||| ||||| || || Sbjct 4808 AGGCCCTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGAC----TTGCGCGCCTC 4753 Query 138951 G---ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT 139007 | | ||||| ||||| || ||||||| ||||| | || || |||||||| || Sbjct 4752 GGCCACGGGATAGTAGTTAACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGT 4693 Query 139008 CGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGA-CGTCGACAA 139066 | | | | ||| | ||| | | || |||||| |||| | | | || Sbjct 4692 GACCTCGTAGAGT--TTC----TGGTAGTCGAACACGCCGTCGTCCACGAACTTGGGCAG 4639 Query 139067 ATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATT 139126 | ||| ||||| | ||||||||| ||||| ||||||||| |||| | Sbjct 4638 C------GCCACG----GAGGCCAGGTTGCACACGGCCACCTCGTCGGGGGACGTGTACT 4589 Query 139127 CGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTT 139186 | | | ||| |||| || || | ||| || || | || || || ||| | Sbjct 4588 CCATCACCTCGCAGCACAGGTTGCTGGAGCGGATGGTGCCGAGGTTCTGCTGGTTGGACT 4529 Query 139187 TTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTA 139246 | ||||| || || ||||| ||||| | || ||| || || | || | || | Sbjct 4528 TGCGGTTGGCCGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCA 4469 Query 139247 TAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGC 139302 ||| ||| | | || | || ||| || || | | |||||| Sbjct 4468 GGATGGCGAACCACAGCTGCTGCGCGTTGATGGTCTTG-CGGGCGC---GGCCCTCGCGC 4413 Query 139303 TCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 |||||||| |||||||| || || |||| | || || || | || || | Sbjct 4412 TCGTACTTGTCGTAGAGGCTCTCAAACTCGTCCCCCC-AGCACTCGTAGAGCCCGGGGGC 4354 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || || || | | ||| |||||| |||| |||||| |||||||||| || Sbjct 4353 CTCGTTGGGGCAGAACAAACTCCACTTGCCGTTGGCCTCCACGCGCTTCATGAACAGGTC 4294 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATCTTCCGAACCCATGTTAC 139480 || | ||||| ||| | | || ||||| || | | || || || || | | Sbjct 4293 GGGCACCCACAGCGCGTAGAACAGGTCGCGGGCACGGTGCAGCT--CGTTGCCGTGGTTC 4236 Query 139481 GTTT-CATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 | || || ||||| || || ||||| |||||||| || || || |||||||| | Sbjct 4235 TTGCGCAGGTCCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAG 4176 Query 139540 GCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596 ||| || || ||||| || || || |||| || | | | ||||| |||||| Sbjct 4175 CTGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTACCGGGCCGTGTCGTTGAACACGCGC 4116 Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCT 139656 | ||| || | ||| | | | |||||||||| || ||| |||||| || Sbjct 4115 AGCATGGGGATGATGCCGTTGGAGGAGCCGTTGGTGCCTCGAATGTAGCTGTTGGTGGCG 4056 Query 139657 CGGACGTCATGTACAT--TGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAAT 139714 || | || ||| ||| |||||||||| || || | | ||||| || | |||| | Sbjct 4055 CGAATGT--TGTGCATGCTGATGCCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACT 3998 Query 139715 CGCGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCAT 139773 || | | || || || ||||| ||| |||||||||||| | | || ||||| Sbjct 3997 -GCTTGAGCGTGTCATAGATACCCTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAG 3939 Query 139774 GACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC 139833 || || || ||||| | ||| ||||| |||||| || || ||||||||||||| Sbjct 3938 GAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAG 3879 Query 139834 ATTTGTTTCGACATCAATTCGTACGTTTC 139862 | | | |||||| | |||||||| || Sbjct 3878 AACTTCTGCGACATGAGCTCGTACGTCTC 3850 >seq14 Length=110323 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||||||||| | || ||||| ||||| || || || |||||||| || || | Sbjct 100905 ACGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACGCTCGACGTGGAGCCG 100964 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || || ||||| || ||||| || || || || || || Sbjct 100965 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGAC 101024 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||| || || || ||||| || || | | || || || Sbjct 101025 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTAC 101084 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| ||||| |||| |||| || ||| Sbjct 101085 AACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 101135 >seq54 Length=76991 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||||| ||||| || || || ||||| || || || | | Sbjct 56863 GATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 56922 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || || || |||||||| || || || || || || || Sbjct 56923 GGACTCGATCGACAACGTGAAGCAGAAAATTCAAGACAAGGAGGGCATCCCGCCTGACCA 56982 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || ||||| ||||| | | || || || || Sbjct 56983 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAA 57042 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||| ||||| || ||| ||||| Sbjct 57043 CATCCAGAAGGAGTCGACTCTTCACCTGGTG 57073 >seq710 Length=19765 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 5513 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 5454 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || || || || || || || Sbjct 5453 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 5394 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 5393 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 5359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449862339275600