Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_022969.1 Length=76217 Score E Sequences producing significant alignments: (Bits) Value seq381 165 4e-36 >seq381 Length=31917 Score = 165 bits (182), Expect = 4e-36 Identities = 336/496 (68%), Gaps = 5/496 (1%) Strand=Plus/Plus Query 66270 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66329 ||| | |||||| |||||||| || | ||| | | ||||||||||| ||||| || || Sbjct 25546 CGCATTCATCGATGCTGAGCATGCCATTGACGCCCATTACGCCAAGGCTCTCGGCGTCGA 25605 Query 66330 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66389 | ||||| || || ||||| ||| | ||||| | || || ||||||| || Sbjct 25606 CATCGACGCGCTGTACGTCTCGCAGCCCGACTCGGGCGAAGAAGCTCTTGAGATCGCCGA 25665 Query 66390 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66449 | ||| ||| ||| || | | || | |||| || | ||| |||||| || ||||| Sbjct 25666 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGT 25725 Query 66450 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66509 |||||| || ||||| ||||| || || || ||| || | | ||||| ||||| || Sbjct 25726 GCCGCGAGCGGAGCTGGAAGGTGAAATGGGCGACCAGCAGATTGCGCTGCAGGCGCGACT 25785 Query 66510 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC-ACGCTGACGC 66568 |||| ||||| |||| ||||| || || | | |||| ||||| | || | Sbjct 25786 CATGAGTCAGGCGCTGCGGAAGCTGACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTA 25844 Query 66569 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCA 66628 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 25845 TCTTCCTGAACCAGATCCGCCAGAAGGTTGGCA---TTATCTTCGGATCTCCTGAGGTGA 25901 Query 66629 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 66688 | | ||||||| || ||| | | ||||| || || || |||| | ||||| | Sbjct 25902 CGTCAGGCGGCACTGCCTTGCGCTATTACGCGTCTGTGCGGTTGGACATTCGTCGTAAGA 25961 Query 66689 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 66748 | || |||||||| || ||| |||||||||| || ||||||||| | ||||| Sbjct 25962 CGGCCATCAAGGAAGGTGACCAGGTTGTCGGCAACGAGACGGTGGTGAAGGTGGCCAAGA 26021 Query 66749 ACAAGCTGGCCCCGCC 66764 ||||||||||| |||| Sbjct 26022 ACAAGCTGGCCTCGCC 26037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243750972193660