Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq54 100 6e-16 >seq54 Length=76991 Score = 100 bits (110), Expect = 6e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| ||||| || || ||||| || || || || || | | || Sbjct 57079 ACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 57020 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||| ||||| || | || || || || || || || ||||| Sbjct 57019 GTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 56960 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 |||||||| || ||||| || || || |||| || || || || |||| || | Sbjct 56959 GTCTTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 56901 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| |||| |||||| || || |||||||| Sbjct 56900 TCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 56864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981748325525530