Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq498 248 8e-61 seq54 98.7 9e-16 seq14 95.1 1e-14 >seq498 Length=26695 Score = 248 bits (274), Expect = 8e-61 Identities = 931/1432 (65%), Gaps = 46/1432 (3%) Strand=Plus/Minus Query 146905 AACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCA 146964 ||||| || ||||||||||| | | |||| ||| ||| | ||||| | ||||| Sbjct 5189 AACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGCTCGATGGACTCG 5130 Query 146965 TTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTT 147024 || ||||||| || |||||||||| || || |||||| ||||||| || || || Sbjct 5129 TTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACCAGCAGCGAGTTG 5070 Query 147025 CGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACAT---CGACGAG 147081 || ||||||| | ||| ||||| | | ||||| ||| | ||| || Sbjct 5069 CGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCGCCCAGTTCCAGAGACCCGAGGAC 5010 Query 147082 GGCGTCACGTTCCACATGTCGTACTGGAGCA-CTCCTCGACTGGCGGGACTGCCAGCGAA 147140 || || ||| |||||||||| |||||| | | ||| | ||||| || ||| ||| Sbjct 5009 GGGGTGACGCCCCACATGTCGAACTGGAAGATCCCCTTG-CTGGCCGGCGAGCCCTGGAA 4951 Query 147141 CGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACA-GCTTGCCTCGAGCGCTCCATAGT 147199 ||| |||| ||| || | | |||| || | | ||||| || | |||| Sbjct 4950 CGTCTCGTAGGGGCCGA-GCTCCTTGGCAATCTCCATGGACGTCTCGACGGCGGCGTAGT 4892 Query 147200 ATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATAC 147259 | || || ||| ||| | ||||| || || || | ||||||||| || || || Sbjct 4891 AGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGCTCGCTCTCG-AACGCGTAG 4833 Query 147260 G-CAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTT 147318 || || | ||||| || || | ||||||| |||| |||||| || || || Sbjct 4832 TTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATGCCGATGGGGCGGTGG--- 4776 Query 147319 TCGT-TGCTGCGCTT-CGCGC-TCG-CTATGGGATAGTGGTTGCGATCAATAATCTTGTT 147374 || || || ||| ||||| ||| | | |||||||| ||| || || | |||||| Sbjct 4775 -CGCATGTTGGACTTGCGCGCCTCGGCCACGGGATAGTAGTTAACGTCGATGACCTTGTT 4717 Query 147375 GAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTC 147434 |||||| || || || || || | | |||||||| | | || | ||||| Sbjct 4716 GAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTAGTCGAACACGCCGTC 4657 Query 147435 TTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC 147494 || |||| || |||| || || | || ||||| ||||| |||||| ||| || Sbjct 4656 GTC--CACGAAC---TTGGG-CAGCGCCACGGAGGCCAGGTTGCACACGGCCACCTCGTC 4603 Query 147495 GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATT 147554 || | |||||| || | ||| ||||||||||||| | ||| || | || Sbjct 4602 GGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGGATGGTGCCGAGGTT 4543 Query 147555 TTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 ||||| ||| || || ||| |||||| ||| |||||||| | || |||| ||||| Sbjct 4542 CTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTC 4483 Query 147615 GACTTGCGTTTCAACGATA---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATA 147671 || |||| || | ||| |||| ||| | |||||| | || || Sbjct 4482 GATCTGCGCGTCCAGGATGGCGAACCA---CAGCTGCTGCGCGTTGATGGTCTTGCGGGC 4426 Query 147672 GCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGC 147731 |||||||||| |||||| ||||| | | |||||||||||| || |||| ||| Sbjct 4425 GCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACTCGTCCCCCCAGCACTCGTA 4366 Query 147732 AAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCG 147791 || ||||| || | || || | || |||| || ||| || | ||||| Sbjct 4365 GAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCGTTGGCCTCCACGCGCTT 4306 Query 147792 CATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTT--TGCAA-TCCTC 147848 ||| ||||| || ||||||||||||||||| | || ||||| || |||| || | Sbjct 4305 CATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGGGCACGGTGCAGCTCGTT 4246 Query 147849 GGCGCCCATGTTGCGTTTCAAATTAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAA 147907 | || | ||||| || | || | | | | | | ||||||||||||||| || | Sbjct 4245 GCCGTGGTTCTTGCG---CAGGTCCAGGAACTCGA-ACACGTCGGCGTGCCAGGGCTCGA 4190 Query 147908 TGTAGACGGCCAGCGCACCTTTACGCTTTCCGCC---CTGGTCGACATGGCGCACCATGT 147964 ||||| ||| | || || ||||| ||||| |||||| || | || || ||| Sbjct 4189 GGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTACCGGGCCGTGT 4130 Query 147965 TGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCT 148024 ||| |||||||||| |||||| | |||| | | | |||||||||| || | Sbjct 4129 CGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCGTTGGTGCCTCGAATGT 4070 Query 148025 TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATA 148084 |||| | ||| || | | ||||| | | | ||| || || || | |||| || | Sbjct 4069 AGCTGTTGGTGGCGCGAATGTTGTGCATGCTGATGCCGATACCCCCCGCCCACTTGGAGA 4010 Query 148085 TGGCAGCGCAATCGCCCAATGTCGTGT---AGATGCCGTCGATGCTGTCGTTTTTGACGC 148141 || ||||| | || | ||||| |||| || |||||| ||||| | | | Sbjct 4009 TGCAGGCGCACT-GCTTGAG--CGTGTCATAGATACCCTCGATGGAGTCGTCCTGCATGG 3953 Query 148142 CAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGAC 148201 | | | || || || ||| |||||| | ||||||| || || || || || Sbjct 3952 CCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAAACAGCGTCGGCG 3893 Query 148202 TCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGT 148261 |||||||||| || || || || ||| | |||||||| | ||| | | ||||| Sbjct 3892 TCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTCCAGCGCGGCCTGGATGT 3833 Query 148262 CGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 || | ||| ||||||||||| |||||||| | ||| ||||| || || || Sbjct 3832 CGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCATTTGCTGCGGACGCTC 3781 >seq54 Length=76991 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || || ||||| || || | Sbjct 57057 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCG 56998 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || |||||| || |||| Sbjct 56997 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGAATTTTCTGCTTCACG 56938 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 56937 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTC 56878 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 56877 ACGAAGATCTGCAT 56864 >seq14 Length=110323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 101129 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 101070 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | |||| || ||||| || || || || ||||| Sbjct 101069 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCC 101010 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || |||| | || | | || | ||||||||| |||| Sbjct 101009 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 100950 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||| || || | ||| |||||||| Sbjct 100949 CGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476573845597200