Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2085 280 2e-70 >seq2085 Length=5363 Score = 280 bits (310), Expect = 2e-70 Identities = 463/657 (70%), Gaps = 11/657 (2%) Strand=Plus/Minus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||| || || || || || ||||| || || || | ||| ||||| || || Sbjct 5031 AGCGGCTCGACATGATTCAGATACACGTGGGCATCTCCAATAACGTGAACAAACTCTCCA 4972 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTT 147038 ||||| | || | ||| || || |||| || | || |||| | |||||| || || || Sbjct 4971 GGCTTCAATCCAGCCACCTGCGCAACCA-GTCGCGTAAGCAATGCGTAGCTAGCGATATT 4913 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 ||| || || || || |||||||| |||| | |||||||| |||||| || ||||| || Sbjct 4912 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGAAAGCTCGCC 4853 Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||||||||||| |||||||| | |||||||||||||| |||||||| | || || Sbjct 4852 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 4793 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTC 147218 ||| || ||||| ||||| | ||| | || | | | |||||| | | || | Sbjct 4792 CGCCGGATTCCACGCCGACAGCACGATGCGGCGGTCCGTCGGGTTCGTGCGCAGCTTGTG 4733 Query 147219 GATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGT 147277 |||||||| | |||||||||||||||||||| ||| | | | ||| |||| || Sbjct 4732 GATAACCCCCGCGAGCTGGTCCACGCCCTGGCCAGTGTA-ATCGGCATGCATGTCCGTGT 4674 Query 147278 ACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTC 147337 || |||| ||||| |||| ||||||||||||||| || || || |||||||| || || Sbjct 4673 ACTTGGCGCCAAAATGCCGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCCACCTCTC 4614 Query 147338 TGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCC 147396 | || | ||||| | | | ||| ||||| | ||| | | | ||||||||||| Sbjct 4613 -GCGCCTGCAGCCCTCGACTGTCCAGATACTCGCGCGACGCATTGCCGTCCCAGATGTGG 4555 Query 147397 A-CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | ||| | || | ||| | | | ||| ||| | ||||||||| |||||||| Sbjct 4554 ATGTCCTTCTGCTG-CAGCGTGTGCGCGCTGGTGTCGCCGCTGATGAACCACAGCAGCTC 4496 Query 147456 CTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCCT 147512 ||| || || | ||| || || | |||||| || ||||| |||||| | |||||| Sbjct 4495 CTCGGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCT 4436 Query 147513 CAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTC 147569 || ||| | ||| | || || || |||||||||||||| ||||| | ||| Sbjct 4435 GAGGCTGAACCGCATCTGCGCGCCGAAGACCGACAGCGTGCCCGTCCCCGTGCGGTC 4379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583442269128000