Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq498 143 3e-29 seq54 141 9e-29 seq14 141 9e-29 seq710 113 5e-20 >seq498 Length=26695 Score = 143 bits (158), Expect = 3e-29 Identities = 896/1417 (63%), Gaps = 34/1417 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||||||| ||||||| ||| | ||||| | ||||| || Sbjct 3790 CAGCAAATGATTATGCGCGTGGCGCTGGGCATCCACAAGGCCGACATCCAGGCCGCGCTG 3849 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| ||| || |||||||| |||| || ||||| | Sbjct 3850 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCGACGCCGACGCTGTTTAAC 3909 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || || || |||| || || ||||||| || || | | |||||| || ||| Sbjct 3910 GCCGGAAC-GCCGCGTCCGCAGCTGTCCTCCTGCTTCCTATTGGCCATGCAGGACGACTC 3968 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 |||||| || || || ||||||| | |||||| || ||||| | | || || Sbjct 3969 CATCGAGGGTATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCGGGGGG 4028 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCA-TCGTGTCCACCAACG 7861 || || | | | | || || | ||||||| | ||| || ||| | |||||||| Sbjct 4029 TATCGGCATCAGCATGCACAACATTCGCGCCACCAACAGCTACATTCGAG-GCACCAACG 4087 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | ||| ||| | |||||| ||||||||||||| || ||| || | || | Sbjct 4088 GCTCCTCCAACGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGGTACGTGG 4147 Query 7922 ACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 ||||| || || |||||||| ||| | |||||||| | ||||| |||||||| | Sbjct 4148 ACCAGGGCGGCGGCAAGCGCAAGGGCAGCTTCGCCATCTACCTCGAGCCCTGGCACGCCG 4207 Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA--AAGCGCG 8036 || | | || | || | ||||| ||| || ||| | ||| || || Sbjct 4208 ACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA--GCTGCACCGTGCCCG 4265 Query 8037 CGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGC 8096 ||| || |||| || ||||||||||||| ||||| |||| |||||| | | ||| Sbjct 4266 CGACCTGTTCTACGCGCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTGGAGGCCAACGG 4325 Query 8097 ACAATGGTCGCTCATGTGCCCCGATCGTTG--CCCTTTATTAAAAAACGTTTACGGTTCA 8154 | ||| | | |||||| | || | ||| | | | | | || | Sbjct 4326 CAAGTGGAGTTTGTTCTGCCCC-AACGAGGCCCCCGGGCTCTACGAGTGCTGGGGGGAC- 4383 Query 8155 AAATTTGAACAATTGTACAAACAATACGAACACGACGG-CGCGTACGTGCGGCAAGTGAA 8213 | ||||| | ||| | | ||||| | ||| || |||| || | | | | || Sbjct 4384 GAGTTTGAGAGCCTCTACGACAAGTACGAGCGCGAGGGCCGCGCCCGCAAGACCA-TCAA 4442 Query 8214 AGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACAT 8273 |||| | ||| |||||| | || || | ||| || || |||| | ||| Sbjct 4443 CGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGCGTGCCCTTCAT 4502 Query 8274 GCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTG 8333 ||| ||||| ||||| |||| ||| ||| || ||| | |||||||| | | Sbjct 4503 GCTCTACAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAACCTCGGCACCATCCGCTC 4562 Query 8334 CAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAA 8393 |||||| |||||| || | | |||||| | |||||||| |||||||| ||||| Sbjct 4563 CAGCAACCTGTGCTGCGAGGTGATGGAGTACACGTCCCCCGACGAGGTGGCCGTGTGCAA 4622 Query 8394 TCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGA 8453 || || || ||| | | |||||| || ||||| | | ||||| | Sbjct 4623 CCTGGCCTCCGTGGCGCTGCCCAAGTTCGTGGA-CGACG-----GCGTGTTCGACTACCA 4676 Query 8454 ACAATTGAAAAACGCCGTGCAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAA 8513 || | | | | | | ||| | ||||| | | |||| || || || Sbjct 4677 GAAACTCTACGAGGTCACCAAGGTGGTGACCCGCAACCTCAACAAGGTCATCGACGTTAA 4736 Query 8514 TTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGG 8573 | |||||| ||| || |||||| || |||||||||||| | ||| | ||| | || Sbjct 4737 CTACTATCCCGTGGCCGAGGCGCGCAAGTCCAACATGCGCCACCGCCCCATCGGCATCGG 4796 Query 8574 CGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGC 8633 ||| || || || || ||||| || | | || | | | | ||| ||| | | || Sbjct 4797 CGTCCAGGGCCTCGCGGACGCCTTCATCCTCATGAACTACGCGTTCGAGAGCGAGCAGGC 4856 Query 8634 GCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATT--AGAAG-CCAG 8690 ||| |||||||| || || || ||| | || |||| ||| | ||| | ||| Sbjct 4857 CCGCGAGCTCAACAAGAACATCTTCGAGACGATCTACTACGCCGCCGTCGAGACGTCCA- 4915 Query 8691 CTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCG 8750 || | ||||| || | ||| | ||||| ||| | |||| || |||||| Sbjct 4916 -TG-GAGATTGCCAAGGAGCTCGGCCCCTACGAGACGTTCCAGGGCTCGCCGGCCAGCAA 4973 Query 8751 CGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTC---TTTGTGGAATTGGAG 8807 || || || || | |||||||||| ||||| || |||| | | ||||| ||| | Sbjct 4974 GGGGATCTTCCAGTTCGACATGTGGGGCGTCACCCCGTCCTCGGGTCTCTGGAACTGG-G 5032 Query 8808 CGATTTGAAACGCAAAATTGCTC-AATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACA 8866 || || | || || || || |||| | ||||| |||||| ||||||| || Sbjct 5033 CGGCGCTCAAGGAGAACGTGGTCAAACACGGTCTTCGCAACTCGCTGCTGGTGGCCCCCA 5092 Query 8867 TGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCA 8926 ||||||| || | || || || || | || |||||||| ||| | ||||| | ||| Sbjct 5093 TGCCCACGGCTTCCACGGCCCAGATCCTAGGCAACAACGAGTCCATCGAGCCCTACACGT 5152 Query 8927 ACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963 |||| ||||| | || ||| ||||||| || || Sbjct 5153 CCAACATGTACAACCGCCGTGTGCTGGCCGGTGAGTT 5189 >seq54 Length=76991 Score = 141 bits (156), Expect = 9e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | ||| ||||| || || || ||||| || |||||||||||| Sbjct 57093 TTTCCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCG 57034 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | ||| || ||||| ||||| || || |||| ||||||||| || ||| Sbjct 57033 CTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGC 56974 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || ||||||||||| || || || ||| | | ||| |||| ||| Sbjct 56973 GGGATGCCCTCCTTGTCTTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 56914 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || || || || || ||||| | || || ||||| || ||||| || Sbjct 56913 ACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 56861 >seq14 Length=110323 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 101125 AGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 101066 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 101065 CCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 101006 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || ||| | | ||| |||| ||||||||||| || Sbjct 101005 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTG 100946 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || ||||| || ||||| Sbjct 100945 ATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 >seq710 Length=19765 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 5324 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 5383 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| ||||| || || || || ||||| || ||||| || Sbjct 5384 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 5443 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||||| |||||||| || || ||||| || || || | || || || Sbjct 5444 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 5502 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 5503 AAGATCTGCAT 5513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505358789400400