Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2085 86.0 5e-12 >seq2085 Length=5363 Score = 86.0 bits (94), Expect = 5e-12 Identities = 201/299 (67%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 41022 GCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAG 41081 |||||||| || |||| | || |||||| | || || || || |||| || ||| Sbjct 4778 GCGTGGAATCCGGCGGATCTCAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGCCAG 4837 Query 41082 TTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGA 41141 || ||||| | | || || || || || || |||| || | || | ||||||||| Sbjct 4838 TTCTACGTGGCCGACGGCGAGCTTTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGA 4897 Query 41142 CTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTT 41201 || || || ||||| || || || || || || |||| ||| || |||| || || Sbjct 4898 CTTGGCGTGCCGTTCAATATCGCTAGCTACGCATTGCTTACGCGACTGGTTGCGCAGGTG 4957 Query 41202 ACCAATTTAAAACCTGGTGAATTTGTTCACACGTTA--GGAGATGGACATATTTACATTA 41259 | || || ||||| || |||||| ||||||| ||||||| || | || | | Sbjct 4958 GCTGGATTGAAGCCTGGAGAGTTTGTT--CACGTTATTGGAGATGCCCACGTGTATCTGA 5015 Query 41260 ATCACATAGAGCCGTTAACAGAA-CAACTGACACGAAAACCTAGACCATTTCCAACGCT 41317 |||| | |||||| | ||||| || || || |||| ||| | || || || || || Sbjct 5016 ATCATGTCGAGCCGCT-CCAGAAGCAGCTTACTCGAACACCGCGTCCGTTCCCGACACT 5073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397425628151350