Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq14 109 5e-19 seq54 86.0 5e-12 >seq14 Length=110323 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| || |||| |||| |||| || | |||||| || || || || ||||||||| Sbjct 101137 TTGCCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCG 101078 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 |||| |||| ||||||| ||||| || || ||| | || || ||||| || || ||| Sbjct 101077 CTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGC 101018 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || ||||| | |||| | | || | | ||| | | || Sbjct 101017 GGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 100958 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||||| ||||| || ||||| ||||| ||||| Sbjct 100957 ACGTCGAGCGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 >seq54 Length=76991 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||||| |||| |||| || ||||| || || Sbjct 57060 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCA 57001 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || || ||||| | ||||| || || || || | ||| Sbjct 57000 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGAATTTTCTGCTTC 56941 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | | ||| | | || || || || || || | ||||| ||||| || Sbjct 56940 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTC 56881 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 56880 TTCACGAAGATCTGCAT 56864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424901928372240