Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq498 122 3e-22 seq374 89.7 2e-12 >seq498 Length=26695 Score = 122 bits (134), Expect = 3e-22 Identities = 366/549 (67%), Gaps = 12/549 (2%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| || || ||| | || ||||||||| || ||| || ||||| || || || || Sbjct 4098 CGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGGTACGTGGACCAGGGCGG 4157 Query 255031 CGGCAAACGCCCAGG-AGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAAC 255089 |||||| ||| || ||| ||| |||||||||| ||||| |||||||||||| || | Sbjct 4158 CGGCAAGCGCAAGGGCAGC-TTCGCCATCTACCTCGAGCCCTGGCACGCCGAC-GTGTTC 4215 Query 255090 G-GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTAC 255148 | ||| | ||| | | || ||||| |||| || ||||||||| | | | Sbjct 4216 GAGTTCCTGGACCTGCGCAAGAACCACGGCAACGAGCTGCACCGTGCCCGCGACCTGTTC 4275 Query 255149 -AC-CGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGA 255206 || |||||| ||||| ||| ||||| ||| |||||||| ||| | |||| Sbjct 4276 TACGCGCTGT-GGGTGC-CCGACCTGTTCATGAAGCGCGTGGAGGCCAACGGCAAGTGGA 4333 Query 255207 GCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAA 255266 | | | || |||||| | ||||| || ||| | ||||| ||||||||||| | Sbjct 4334 GTTTGTTCTGCCCCAACGAGGCCCCCGGGCTCTACGAGTGCTGGGGGGACGAGTTTGAGA 4393 Query 255267 AACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAG 255325 || || |||||||||| | ||||| | || | | | | | |||| || || Sbjct 4394 GCCTCTACGACAAGTACGAGCGCGAGGGCCGCGCCCGCAAGACCA-TCAACGCGCAGCAG 4452 Query 255326 ATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAA 255385 | ||| | | || || | |||| | || || || |||| ||| | | |||| Sbjct 4453 CTGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGCGTGCCCTTCATGCTCTACAAG 4512 Query 255386 GAC-CACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCT 255444 ||| | || |||| ||| ||||| | ||| ||| || || ||| | ||||| Sbjct 4513 GACGCGGCCAACCGCA-AGTCCAACCAGCAGAACCTCGGCACCATCCGCTCCAGCAACCT 4571 Query 255445 GTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTC 255504 |||| |||| | | | | ||||||| | | ||||||||||| |||||| |||| || Sbjct 4572 GTGCTGCGAGGTGATGGAGTACACGTCCCCCGACGAGGTGGCCGTGTGCAACCTGGCCTC 4631 Query 255505 CATCTCGCT 255513 | | |||| Sbjct 4632 CGTGGCGCT 4640 >seq374 Length=32324 Score = 89.7 bits (98), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 443763 CTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACT 443822 ||||||||||||| | || ||||| || || |||| || |||| ||| ||||| || Sbjct 1705 CTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCT 1646 Query 443823 GATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACAT 443882 |||||| || ||||||||| |||| |||||||| || || | ||| |||| | | Sbjct 1645 GATCAGCCGTGACGAGGGTATGCACACGGACTTCGCGTGCCTCATGTACTCCAAGC---T 1589 Query 443883 CGTGCACAAGCTGCC 443897 ||| |||||||||| Sbjct 1588 GGTGAACAAGCTGCC 1574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588208402020150