Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq498 190 3e-43 seq642 86.0 8e-12 >seq498 Length=26695 Score = 190 bits (210), Expect = 3e-43 Identities = 1103/1739 (63%), Gaps = 48/1739 (3%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| ||||||||||| || | ||||| ||||| | ||||| || | ||||||| Sbjct 5501 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTG 5442 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCC 110488 || || || | ||| || ||| | ||||| ||| |||| || || Sbjct 5441 CTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACCG 5382 Query 110489 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGA 110548 || | |||| || || | || ||||| ||| || ||||| || || || Sbjct 5381 CGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 5322 Query 110549 TTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATG 110608 | ||||| | ||| ||||| | | ||||| | ||| || || | |||| || Sbjct 5321 TCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGATC 5262 Query 110609 AGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTG 110668 ||| || || | ||||| || | || |||| || || | |||| |||| Sbjct 5261 TGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTTG 5202 Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 || || || |||||||| || || | | ||| ||||| | ||||| || Sbjct 5201 TTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGC 5142 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 || | | | || || || || | ||| || || ||||| || || ||||| || |||| | Sbjct 5141 TCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACC 5082 Query 110789 AAAAGACTGTTACGAAGACCCTTCTCCTTGATG-CGTTC--CTTGAGAACATCCCAGTCG 110845 | || ||| |||||||| | | ||| ||||| |||||| | |||||| Sbjct 5081 AGCAGCGAGTTGCGAAGACCGTGTT---TGACCACGTTCTCCTTGAGCGCCGCCCAGTTC 5025 Query 110846 TAGTT----GAGCTTGGTTTCACCTTCCCACATGTCAAACTG-AAGCACCCCTTGGGACG 110900 || ||| || | || |||||||||| ||||| ||| ||||||| | Sbjct 5024 CAGAGACCCGAGGACGGGGTGACGC-CCCACATGTCGAACTGGAAGATCCCCTTGCTG-G 4967 Query 110901 CGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA-GCCAATTCACA-GCTCGC 110958 | || || |||| || || || |||| || | ||| | | |||| || | || Sbjct 4966 CCGGCGAGCCCTGGAACGTCTCGTAGGGGCC--GAGCTCCTTGGCAATCTCCATGGACGT 4909 Query 110959 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 111018 ||| | || |||| || || || || ||||| || | ||| ||| | || Sbjct 4908 CTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGCTC 4849 Query 111019 TGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 111078 || || |||||| | || || | |||||||| || || || || | || Sbjct 4848 GCTCTCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATGCC 4789 Query 111079 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138 || || | ||| ||||| || ||||| ||||| | |||||||| | || ||| Sbjct 4788 GATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGATAGTAGTTAACGTC 4729 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 111198 ||||| ||| || || ||| || | ||| |||| || | ||||| | || || Sbjct 4728 GATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTAGTC 4669 Query 111199 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 || || | || | || |||| || || || | || |||| ||||| || Sbjct 4668 GAACACGC------CGTCGTCCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGCACAC 4615 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG---GAACTCTT 111315 ||| ||| || |||||||| | | || || | |||| || | Sbjct 4614 GGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGG-- 4557 Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375 || || || | |||| ||||| ||| |||| ||| ||||||||||||||| | Sbjct 4556 -ATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAA 4498 Query 111376 GGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTAC 111435 |||| |||||||| |||| | | || || || ||| || | || || || Sbjct 4497 GGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGCGTTG 4440 Query 111436 AATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 | ||| ||| || || ||||| ||||||||| ||||||| |||||||| || Sbjct 4439 A-TGGTCTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACTCGTC 4381 Query 111493 ACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCAC 111551 ||| | || ||| |||| || || |||| || || ||||| | | ||| | || Sbjct 4380 CCCC-CAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCGT 4322 Query 111552 CTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TA 111610 |||| || ||||||||||| ||||| || | |||||| | | || || || | Sbjct 4321 TGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGGG 4262 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 111670 ||| | || | |||| || ||||| || | || |||||||| | | || ||| Sbjct 4261 CACGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCGGCG 4203 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGAT-CCCTTTCG---ACGCCCAGCTTGATTTAC 111726 ||||| ||||| || |||| |||| || | ||||| || | || | || | || Sbjct 4202 TGCCAGGGCTCGAGGTAGATGGCGA-AGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 4144 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 || || || ||| |||| || ||||| ||||| || || || || | || || || Sbjct 4143 GTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCGTT 4084 Query 111787 TGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845 || || ||||| || | || |||| | | | || ||| || || ||||||| Sbjct 4083 GGTGCCTCGAAT-GTAGCTGTTGGTGGCGCGAATGTTGTGCATGCTGATGCCGATACCCC 4025 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 | |||||||| ||||| || |||| | | || || |||||||||| | ||| |||| Sbjct 4024 CCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAGT 3965 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 | |||| |||| | |||||||| ||||| |||||| | || || || || || | Sbjct 3964 CGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAA 3905 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAG 112024 | || || || || ||||| |||| | || | || ||||| ||||| ||||||| Sbjct 3904 ACAGCGTCGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTCCAGC 3846 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | | ||||| || ||||||||| | || || ||||| | ||| | ||| || Sbjct 3845 GCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCATTTGCTGCGG 3787 >seq642 Length=21628 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 15775 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 15834 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 15835 CCGGTAGGAGCT 15846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627982777992000