Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq498 266 4e-66 seq374 170 2e-37 >seq498 Length=26695 Score = 266 bits (294), Expect = 4e-66 Identities = 1111/1731 (64%), Gaps = 48/1731 (3%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || ||||||||||||| ||||||||| || | ||||| || | | ||| Sbjct 5502 GTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT 5443 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | || ||| || | ||| || ||| | || || ||| || || Sbjct 5442 GCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACC 5383 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 || || |||| || || | || ||||| |||||| |||||||| ||| |||| Sbjct 5382 GCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 5323 Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 | ||| | | ||| ||||| || | || || | ||| || || | || | || Sbjct 5322 CTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGAT 5263 Query 118082 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTT 118141 ||| || || || ||||| || | || |||| |||| || || | ||| Sbjct 5262 CTGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTT 5203 Query 118142 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGG 118201 || || | |||||||| || || || | || || |||| |||||| || Sbjct 5202 GTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGG 5143 Query 118202 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 118261 ||| | | |||| ||||| || | ||| ||||| ||||| || ||||||||||| |||| Sbjct 5142 CTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCAC 5083 Query 118262 GAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTC--CTTGAGAGCGTCCCAGTC 118318 || || ||| || ||||| | ||| | | ||||| |||||| || |||||| Sbjct 5082 CAGCAGCGAGTTGCGAAGACCGTGTTTGACCA---CGTTCTCCTTGAGCGCCGCCCAGTT 5026 Query 118319 GTAGTT----GAG--CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 118372 || ||| | || | ||| ||||| || ||||||| ||| || | | Sbjct 5025 CCAGAGACCCGAGGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATCCCCTTGCT 4969 Query 118373 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT-TCGGAGCT 118429 || ||||| |||| || ||||| || ||||| | |||| | |||| || | Sbjct 4968 GGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCG---AGCTCCTTGGCAATCTCCATGGA 4912 Query 118430 CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 118489 || ||||| ||| |||| || || || || || ||| || | | ||||| Sbjct 4911 CGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTG 4852 Query 118490 GTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCG 118547 ||| || |||||| ||| || | || || | |||||||| || ||||| ||| Sbjct 4851 CTCGCTCTCGAACGCGTAGTT--CATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCG 4794 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTC 118607 | ||| || ||||| || | ||| || ||||| || || |||||||||| | || Sbjct 4793 ATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGATAGTAGTTA 4734 Query 118608 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 118667 ||||| ||| | || || || ||| || ||||| |||| || | || || | | Sbjct 4733 ACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGG 4674 Query 118668 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 118727 || || || || | || | || |||| || || || | || ||||| || Sbjct 4673 TAGTCGAACACGC------CGTCGTCCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTG 4620 Query 118728 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAAC 118785 ||||| | ||| || |||||||| || | || ||||| ||| || | Sbjct 4619 CACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAG 4560 Query 118786 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCA 118845 |||||||| | ||||| || || ||||| ||| ||| |||||||| |||| Sbjct 4559 CGG--ATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCA 4502 Query 118846 TGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTG 118905 || | ||| |||||||| | || | | || || || ||| || | || || Sbjct 4501 TGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGC 4444 Query 118906 GCACAGTGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 118962 | | ||| ||| || || ||||| ||||||||| ||||||| ||||||| Sbjct 4443 GTTGA-TGGTCTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACT 4385 Query 118963 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 119022 | || ||| | ||| ||||||| || |||| | |||||||| | | ||| | | Sbjct 4384 CGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGC 4325 Query 119023 CACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC-C 119081 | |||| || ||||||||||| ||||| || | ||| ||||| |||| || || | Sbjct 4324 CGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGC 4265 Query 119082 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 119141 | || | || | || | || || || |||| |||| || || | | || Sbjct 4264 GGGCACGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCG 4206 Query 119142 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTT 119198 |||||||| || || ||||| | |||| ||||| || | || |||||| Sbjct 4205 GCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCC 4146 Query 119199 ACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCA 119258 || |||| || ||| |||| || || || ||||| || ||||| || | ||| ||| Sbjct 4145 ACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCG 4086 Query 119259 TTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCC 119318 || || || ||||| || |||| | | | ||| ||| || || |||||| Sbjct 4085 TTGGTGCCTCGAATGTAGCTGTTGGTGGCGCGAATGTTGTGCATGCTGATGCCGATACCC 4026 Query 119319 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 119378 || |||||||| ||||| ||||||| | |||| || | ||||| || ||||| ||| Sbjct 4025 CCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAG 3966 Query 119379 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTG 119438 || ||| | || | ||||||||| |||| || || | || || || ||||| Sbjct 3965 TCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTA 3906 Query 119439 AAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAA 119497 || || || || |||||||| |||| | || | || ||||| ||||| ||||||| Sbjct 3905 AACAGCGTCGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTCCAG 3847 Query 119498 GACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 |||| | ||||| || ||| || || | || || ||||||| ||| Sbjct 3846 CGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCAT 3796 >seq374 Length=32324 Score = 170 bits (188), Expect = 2e-37 Identities = 361/530 (68%), Gaps = 18/530 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 1322 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATC 1381 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| ||| | || |||||| || | | | | ||||| Sbjct 1382 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTTGGCACACCCAGCGAGTACAACAGACGG 1441 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||| ||||||| |||| | | |||||||| ||||| || | ||| Sbjct 1442 TCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACA 1501 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | |||| | | ||| || |||| || || ||||| || |||| Sbjct 1502 -GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAATCTCGTG 1560 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 | | | ||| | ||| | || || |||| |||| | |||| | | Sbjct 1561 CACGCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAGGCACG-CGA 1613 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | ||||||||||||| ||| || || |||||||||| ||| || |||| Sbjct 1614 AGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCA 1673 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || |||||||| | |||||| || | || || ||||| |||||||| || |||| Sbjct 1674 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCT 1733 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCAC 130198 |||| |||||||| | |||||||| | | || || || | || ||||| Sbjct 1734 CCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACACGCGGGTCGCACCAC 1792 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 || | |||||| ||||| || |||| | ||||||| |||| |||||| Sbjct 1793 TTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCGATCGC 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618386730141200