Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq498 188 8e-43 seq374 107 2e-18 seq5612 102 1e-16 >seq498 Length=26695 Score = 188 bits (208), Expect = 8e-43 Identities = 1108/1745 (63%), Gaps = 58/1745 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | ||||||||||| | || || || || ||||| | | | Sbjct 3787 CCGCAGCAAATGATTATGCGCGTGGCGCTGGGCATCCACAAGGCCGACATCCAGGCCGCG 3846 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 ||||||| ||||| ||||| || | || | |||| ||||| || || || || || Sbjct 3847 CTGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCGACGCCGACGCTGTT 3905 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || || || || || | || || ||||| |||||||| | |||| |||| || Sbjct 3906 TAACGCCGGAACGCCGCGTCCGCAGCTGTCCTCCTGCTTCCTATTGGCCATGCAGGACGA 3965 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | |||||||||| || || | | |||| || ||||| |||||||| || Sbjct 3966 CTCCATCGAGGGTATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCGGG 4025 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 |||||| || || ||| || | | | |||| || | || ||||| || || | Sbjct 4026 GGGTATCGGCATCAGCATGCACAACATTCGCGCCACCAACAGCT-ACATTCGAGGCACCA 4084 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || || || || ||||| ||||| || |||| ||| || || || | Sbjct 4085 ACGGCTCCTCCAACGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGGTACG 4144 Query 104580 TAAATCAAGCTG--GGC-GTCGAAAGGG-ATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | | || | | ||| || ||||| | || |||| |||| || ||||| |||||| Sbjct 4145 TGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCT-TCGCCATCTACCTCGAGCCCTGGCAC 4203 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG- 104694 || || | | |||||||| || |||| ||||| || |||| | || | ||| Sbjct 4204 GCCGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA-GCTGCACCGTGC 4262 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 |||||| || |||| ||| || ||| | || || || ||||||||| | || |||| | Sbjct 4263 CCGCGACCTGTTCTACGCGCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTGGAGGCCAA 4322 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTG 104813 ||||| ||| | | || || || || |||| || || |||| ||| ||| | ||| | Sbjct 4323 CGGCAAGTGGAGTTTGTTCTGCCCCAACGAGGCCCCCGGGCTCTACGAGTGCTG-GGGGG 4381 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGT 104871 | |||||||| ||| ||| ||||||||| || || | ||| | || ||| | Sbjct 4382 ACGAGTTTGAGAGCCTCTACGACAAGTACGAGCGCGAGGGCC--GCGCCCGCAAGACCAT 4439 Query 104872 ----GC-CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 || |||| || ||||| || || || | | || | |||||| || Sbjct 4440 CAACGCGCAGCAGC-----TGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGCGTG 4494 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| ||||| |||| ||| || || |||| | || Sbjct 4495 CCCTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAACCTCGG---C 4551 Query 104987 ATCAAGAGTTC---CAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 | || | || ||| || || || | |||| | || | || ||| | Sbjct 4552 ACCATCCGCTCCAGCAACCTGTGCTGCGAGGTGATGGAGTACACGTCCCCCGACGAGGTG 4611 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 105103 || ||||| ||||| || || | || || ||||||| ||||| ||| | Sbjct 4612 GCCGTGTGCAACCTGGCCTCCGTGGCGCTGCCCAAGTTCGTGGA-----CGACGGCG-TG 4665 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 || || || | |||||| |||| || || || || ||| ||||| |||| || Sbjct 4666 TTCGACTACCAGAAACTCTACGAGGTCACCAAGGTGGTGACCCGCAACCTCAACAAGGTC 4725 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 || || || | || ||||| | || || || || || ||| | ||||| || Sbjct 4726 ATCGACGTTAACTACTATCCCGTGGCCGAGGCGCGCAAGTCCAACATGCGCCACCGCCCC 4785 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT 105283 || || |||| || ||||| |||||||| | ||||| || | |||| || || Sbjct 4786 ATCGGCATCGGCGTCCAGGGCCTCGCGGACGCCTTCATCCTCATGAACTACGCGTTCGAG 4845 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 ||| | || || |||| | ||| || ||||| || || ||||||| | Sbjct 4846 AGCGAGCAGGCCCGCGAGCTCAACAAGAACATCTTCGAGACGATCTACTACGCCGCCGTC 4905 Query 105344 GAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 ||| | || || ||| | || ||| || || || || || || |||| || | Sbjct 4906 GAGAC--GTCCATGGAGATTGCCAAGGAGCTCGGCCCCTACGAGACGTTCCAGGGCTCGC 4963 Query 105402 CAGCTTCA-CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGA----GACCAAGCTTC 105455 | || || ||||||| ||| || || || ||||||| || | | || | || Sbjct 4964 CGGC--CAGCAAGGGGATCTTCCAGTTCGACATGTGGG-GCGTCACCCCGTCCTCGGGTC 5020 Query 105456 ACTACGACTGGGAAGCTCTCAAG--GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTC 105512 || |||||| || |||||| ||||| ||| | | |||||||| ||| | Sbjct 5021 TCTGGAACTGGGCGGCGCTCAAGGAGAACGTGGTCA---AACACGGTCTTCGCAACTCGC 5077 Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572 | || |||| || ||||| || || ||||| || || ||| | || || || || | | Sbjct 5078 TGCTGGTGGCCCCCATGCCCACGGCTTCCACGGCCCAGATCCTAGGCAACAACGAGTCCA 5137 Query 105573 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 105632 | || ||||||||| | ||||| || | | || || || ||||| ||| | Sbjct 5138 TCGAGCCCTACACGTCCAACATGTACAACCGCCGTGTGCTGGCCGGTGAGTTCACGATCG 5197 Query 105633 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 105692 | |||||| | || || | || |||| ||| | || ||||| | || || Sbjct 5198 TGAACAAGTACCTGATGAAGGAGCTCATTGAGCTGGGCATCTGGACACCCGACGTGCGCA 5257 Query 105693 ATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTA 105752 ||| || |||| | || || ||| | || || | || || || || | | | Sbjct 5258 ATCAGATCCTGAACGACGGCGGCTCCGTGCAGAAGGTGAAGGCCATCCCCGATCACGTCA 5317 Query 105753 AGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAG 105812 || || |||| || || ||||| |||||| ||||| || | ||| || | || | Sbjct 5318 AGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCAGTACTGGACTTGTCGGCCG 5377 Query 105813 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGA 105872 | || ||| || |||| || ||||| | || || ||| | || || | Sbjct 5378 ACCGCGGTGCCTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACCA 5437 Query 105873 TGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGT 105932 | ||||||| | || |||||| | ||| ||||||||||| ||||| || || |||| Sbjct 5438 TCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACCGGCATGT 5497 Query 105933 ATTAC 105937 | ||| Sbjct 5498 ACTAC 5502 >seq374 Length=32324 Score = 107 bits (118), Expect = 2e-18 Identities = 187/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 || || |||| ||| || ||||| | | |||||| | || || | || ||| | Sbjct 1893 CTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGACCACCTGCTGCGCGCGATCGAG 1834 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA---G 94788 || | ||||| | | ||||||||| | ||||| | ||||||| || | | Sbjct 1833 ACGATCCCGTGCGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGTGTG 1774 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| || | || || || || ||||| || |||||||| Sbjct 1773 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTC 1718 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || ||||||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 1717 GGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 1658 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| ||||||||||| Sbjct 1657 CTCGAACGAGCTGATCAGCCGTGACGAGGG 1628 >seq5612 Length=1235 Score = 102 bits (112), Expect = 1e-16 Identities = 168/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||||| || || | |||||| | || | ||||| | | ||||||||| | Sbjct 831 GAGAAGAACCACCTGCTGCGTGCCATCGAGACGATCCCGTGCGTCAAGAAGAAAGCGCAC 772 Query 94762 TGGGCTATGAAGTGGTTTGATAC---AAAGTCG-CGTTCCTTTGCTGAGCGACTCTTCGC 94817 ||||| | ||||||| || | | |||| ||| || | ||||| || | || Sbjct 771 TGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGTACC----CGGAGCGTCTGCTGGC 716 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 || || || ||||| ||||| ||||| || || |||||| | || | |||||||| Sbjct 715 GTTCGCTGCCGTGGAGGGCATCTTTTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAA 656 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||| || |||||||| ||||| ||||||| |||||||| ||| || ||||| || Sbjct 655 GAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGAGACGAAGG 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583215086934800