Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq761 165 2e-35 seq366 89.7 2e-12 >seq761 Length=18355 Score = 165 bits (182), Expect = 2e-35 Identities = 503/774 (65%), Gaps = 5/774 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || || ||||| | || || ||| || || || || || || | Sbjct 7062 CCCGAGGAGATCTCGTCCATGGTGCTTGTCAAGATGCGAGAGATCGCCGAGGCTTACATC 7003 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 ||| | ||| | |||| || | || || ||||| ||||| || ||| | ||||| Sbjct 7002 GGTAAGCAAGTGAAGAATGCCGTGGTGACGGTCCCAGCGTATTTCAACGATTCGCAGCGC 6943 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || || || ||| | || || || | || || ||||| Sbjct 6942 CAAGCCACGAAGGACGCCGGGGCTATCGCTGGGCTGAACGTGCTGCGTATCATCAATGAG 6883 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || ||||| || ||||| || ||||| || || | | | | || | || | Sbjct 6882 CCGACCGCTGCTGCCATTGCGTACGGGCTGGACAAGAAGGGCGGT---GAGCACAACGTG 6826 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || |||||| | || || || || |||||||| || || || || ||||||| || Sbjct 6825 CTGATCTTTGATCTGGGAGGCGGGACGTTTGATGTCTCGCTGCTTACGATTGAAGAAGGC 6766 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || || || ||||| ||||| ||||| ||||| ||||||||| Sbjct 6765 ATCTTCGAGGTGAAGGCGACGGCGGGCGATACTCATCTGGGTGGCGAAGACTTTGATAAT 6706 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGAT 349951 ||||| || | || || | || || ||||| || | | ||| | || Sbjct 6705 CGTCTTGTAGAGTTCTTCGTCACCGAGTTCAAGCGCAAATACCACAAGGATCTGACAGTG 6646 Query 349952 AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCA 350011 || | | || |||||||| || | || |||| || || || |||||| | | || Sbjct 6645 AACTCACGTGCGATGCGTCGTCTCCGTACAGCGTCCGAGCGCGCGAAGCGTACTCTGTCC 6586 Query 350012 TCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCA 350071 || | | ||| | | | || || ||||| || || |||| |||||| || Sbjct 6585 ACTTCGGCGCAAGCGTACCTGGAGATCGATTCGCTGTTAGACGGCATCGATTTCAACTCG 6526 Query 350072 TCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGAT 350131 | ||||| |||||||| ||||| || | || | || | ||| | || ||| || Sbjct 6525 ACCATTACTCGTGCTCGATTTGAGGATCTCTGCAACGAGTTCTTTCGCAAGACTATGAAT 6466 Query 350132 CCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTT 350191 ||||||| | || | || | || |||| || || ||| | | || || || Sbjct 6465 CCTGTGGCGCAGGTTCTGCGCGACTCCAAGCTGTCGAAGAACCAGGTGAACGAGGTGGTC 6406 Query 350192 TTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAAT 350251 || || || || || || || || || || || || ||||| | || || || ||| Sbjct 6405 TTGGTCGGAGGGTCGACTCGCATCCCGAAGGTGCAGCAGTTGTTGATGGACTTCTTCAAT 6346 Query 350252 GGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 ||||| || | ||| || || || ||||| |||||||| || || || ||||| Sbjct 6345 GGCAAGGAGCTGTTCAAG-TCGATCAATCCTGATGAAGCAGTCGCCTACGGTGC 6293 >seq366 Length=32725 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 26835 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 26776 Query 74548 TCGGGCA 74554 ||||||| Sbjct 26775 TCGGGCA 26769 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 27867 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 27808 Query 74548 TCGGGCA 74554 ||||||| Sbjct 27807 TCGGGCA 27801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515132672984810