Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2085 192 5e-44 seq507 107 2e-18 >seq2085 Length=5363 Score = 192 bits (212), Expect = 5e-44 Identities = 454/678 (67%), Gaps = 27/678 (4%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || || | || ||| || ||||| || ||||| | ||| Sbjct 5043 AGCTGCTTCTGGAGCGGCTCGACATGATTCAGATACACGTGGGCATCTCCAATAACGTGA 4984 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 ||||||||||| || | | || | || || || | || ||| || | | |||| Sbjct 4983 ACAAACTCTCCAGGCTTCAATCCAGCCACCTGCGCAACCAGTCGCGTAAGCAATGCGTAG 4924 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 || ||||| || || || || || || |||||||| |||| | |||||| | ||| || Sbjct 4923 CTAGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 4864 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || ||||| |||||| |||||| ||||| || | ||||||||| || || ||||| Sbjct 4863 GAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 4805 Query 30104 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT 30159 | || || || || ||||| || ||| | |||||| | ||| ||||| Sbjct 4804 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATGCGGCGGTCCGTCGGGTT 4748 Query 30160 GTTCCTGA---TGAGGT---CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30213 | | | || || || | ||| ||||| ||||| ||| || | ||| Sbjct 4747 CGTGCGCAGCTTGTGGATAACCCCCGCG------AGCTGGTCCACGCCCTGGCCAGTGTA 4694 Query 30214 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 || || |||||||||||||| || || ||||||| ||||||||| ||||| ||||| Sbjct 4693 ATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATGCCGCCACTGGAAGCCGTAGACCGG 4634 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAAC 30332 ||| ||||| ||| | || | | || | ||||| | |||||| | | || | || Sbjct 4633 TCCGAGGTCGCCCACCTCTC-GCGCCTGCAGCCCTCGACTGTCCAGATACTCGCGCGACG 4575 Query 30333 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTC 30392 | ||| |||||||||| | | |||||| ||| | | | | ||| || | Sbjct 4574 CATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCGCTGGTGTCGCCGC 4515 Query 30393 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30452 ||| |||||||||||||||||| | ||| | ||| || || | |||||||||||| | Sbjct 4514 TGATGAACCACAGCAGCTCCTCGGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCA 4455 Query 30453 GGGGAAAC----TGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACT 30508 | || ||| |||||| |||||| | ||| ||| | || || || |||| Sbjct 4454 GCGGGAACACGTTGTCCC-TGAGGCTGAACCGCATCTGCGCGCCGAAGACCGACAGCGTG 4396 Query 30509 CCCGTGCCCGTCCTGTCT 30526 ||||| ||||| | |||| Sbjct 4395 CCCGTCCCCGTGCGGTCT 4378 >seq507 Length=29800 Score = 107 bits (118), Expect = 2e-18 Identities = 206/304 (68%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 49036 CCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTCGC 49095 |||||||| | || || ||||| | ||||||| | |||||| || | | ||| | Sbjct 14889 CCACCTCCTGCACCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCC 14830 Query 49096 CCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCC 49155 | | || || | ||| ||| | | ||| ||||| || ||||| | |||||| | Sbjct 14829 CGCGCTGCACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGC 14770 Query 49156 TGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCCGG 49215 |||||||| ||| | ||| || || || ||| || || || || || |||||||| | Sbjct 14769 GGTAGTCGGCGTCGATCACGCCCGCGCCCGTGTCGATGAACTTCTTGAGCGCCAGGCCAG 14710 Query 49216 ACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTTTA 49275 | | || ||||| | ||||| ||| | ||||| || ||||||||||||| | Sbjct 14709 AGCGCGGCGCCACGCGCGCGTAGCAGCCGGTGGGCACGGCGACCACCAGGTCCGTCTTGA 14650 Query 49276 CCAGGGCCCTGTCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACCCG 49335 | ||| || || || | ||||| |||| | || ||||||| |||||| |||| Sbjct 14649 CGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAGGCGGCCGACAGGTCCAGGCCCG 14590 Query 49336 CGGC 49339 |||| Sbjct 14589 CGGC 14586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406279351536840