Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq54 98.7 6e-16 seq14 84.2 1e-11 >seq54 Length=76991 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||||| || ||||| |||||| || ||||| || || Sbjct 57090 CCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 57031 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || || || || || || | |||||| ||||| ||||| Sbjct 57030 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 56971 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| ||| || ||| | || | ||| |||||| Sbjct 56970 ATGCCCTCCTTGTCT-TGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 56912 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||| || ||||| || ||||| | ||| ||||| || |||||||| || Sbjct 56911 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 56861 >seq14 Length=110323 Score = 84.2 bits (92), Expect = 1e-11 Identities = 166/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | ||||||| ||||| || || || |||||| || ||||| || || Sbjct 101138 GTTGCCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC 101079 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 || || || |||||||||| || || || || || || | ||||| ||||| || Sbjct 101078 GCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGG 101019 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 ||| | ||||||||||| ||||| || || ||| | || | ||| || Sbjct 101018 CGGGATGCCCTCCTTGTCCTGAATCTTCTG-CTTCACGTTGTCGATCGAGTCCGACGGCT 100960 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT-GTTGATT 34713 |||| || | || || || || ||||| | ||| ||||| || |||||||| || | || Sbjct 100959 CCACGTCGAGCGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCGTGGCTT 100900 Query 34714 GT 34715 || Sbjct 100899 GT 100898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314705549740910