Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2085 269 2e-67 >seq2085 Length=5363 Score = 269 bits (298), Expect = 2e-67 Identities = 476/691 (69%), Gaps = 7/691 (1%) Strand=Plus/Plus Query 34154 GACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGG 34213 ||||| || |||||||| || || || || |||||| | ||| || | || ||| || Sbjct 4379 GACCGCACGGGGACGGGCACGCTGTCGGTCTTCGGCGCGCAGATGCGGTTCAGCCTCAGG 4438 Query 34214 GGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAG 34270 | | | || |||||||| ||||| || || |||| |||| ||||||| ||||||| Sbjct 4439 GACAACGTGTTCCCGCTGCTCACGACCAAGCGCGTGTTCTGGCGCGGCGTGGCCGAGGAG 4498 Query 34271 CTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAG 34330 |||||||||||| | || || | ||| | | | | ||| | || | | Sbjct 4499 CTGCTGTGGTTCATCAGCGGCGACACCAGCGCGCACACGCTGCAGCAGAAGGACATCCAC 4558 Query 34331 ATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAG 34390 |||||||||| | | ||| || || | |||||||| || ||| | | | || ||| Sbjct 4559 ATCTGGGACGGCAATGCGTCGCGCGAGTATCTGGACAGTCGAGGGCTGCAGGCGCGAGAG 4618 Query 34391 GAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGG 34450 | ||||||| | || ||||||||||| ||||||||| | || ||||| || |||| | Sbjct 4619 GTGGGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGGCATTTTGGCGCCAAGTACACG 4678 Query 34451 GGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACC 34510 | | | || || || | || ||||| | ||||||||| | || ||| ||| Sbjct 4679 GACATGCATGCCGATTACACTGGCCAGGGCGTGGACCAGCTCGCGGGGGTTATCCACAAG 4738 Query 34511 TTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTC 34570 || |||||| ||| | | |||||| ||| |||||||| ||| ||||||| Sbjct 4739 CTGCGCACGAACCCGACGGACCGCCGCATCGTGCTGTCGGCGTGGAATCCGGCGGATCTC 4798 Query 34571 CCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAG 34630 | |||||||||||| |||||||||| ||||||| |||||||| || | || ||| Sbjct 4799 AATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGCGAG 4858 Query 34631 CTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATT 34690 || ||||||||| | || || || |||| |||||||| | || ||||||||||| || Sbjct 4859 CTTTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAATATC 4918 Query 34691 GCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAG 34750 ||||| ||||| |||| ||| || | || || || | || ||| ||||| ||| Sbjct 4919 GCTAGCTACGCATTGCTTACGCGACTGGTTGCGCAGGTGGCTGGATTGAAGCCTGGAGAG 4978 Query 34751 CTGGTGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGA 34808 | || | |||| | || ||||| || | || ||||| || |||||| ||||| || Sbjct 4979 TTTGTTC--ACGTTATTGGAGATGCCCACGTGTATCTGAATCATGTCGAGCCGCTCCAGA 5036 Query 34809 TCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 ||||| ||| || || |||||||| Sbjct 5037 AGCAGCTTACTCGAACACCGCGTCCGTTCCC 5067 Score = 269 bits (298), Expect = 2e-67 Identities = 476/691 (69%), Gaps = 7/691 (1%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 |||||||| || || ||| ||||| || ||||| |||||| || ||||| || Sbjct 5067 GGGAACGGACGCGGTGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACATGATTCAGATAC 5008 Query 6566 ATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAG 6623 | || ||||| || | |||| | || | ||| ||||| ||| || | || || | Sbjct 5007 ACGTGGGCATCTCCAATAACGT--GAACAAACTCTCCAGGCTTCAATCCAGCCACCTGCG 4950 Query 6624 CGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGT 6683 | | || ||| |||| ||||| ||||| || ||||||||||| || | ||||||| Sbjct 4949 CAACCAGTCGCGTAAGCAATGCGTAGCTAGCGATATTGAACGGCACGCCAAGTCCCATGT 4890 Query 6684 CTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGA 6743 | |||| || || || | ||||||||| ||||| || | || |||||||| ||||||| Sbjct 4889 CGGCCGAGCGCTGGTACATCTGGCAGGAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGA 4830 Query 6744 GGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCA 6803 |||||||||| |||||||||||| | ||||||| ||| |||||||| ||| || Sbjct 4829 ACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCA 4770 Query 6804 CGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCG 6863 |||| | | ||| |||||| || ||| ||| || | ||||||||| Sbjct 4769 CGATGCGGCGGTCCGTCGGGTTCGTGCGCAGCTTGTGGATAACCCCCGCGAGCTGGTCCA 4710 Query 6864 CTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACT 6923 | ||||| || | || || || | | || |||| || ||||| || | ||||| Sbjct 4709 CGCCCTGGCCAGTGTAATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATGCCGCCACT 4650 Query 6924 GGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCA 6983 |||| ||||||||||| || | ||||||| |||| || | | | ||| || |||||| Sbjct 4649 GGAAGCCGTAGACCGGTCCGAGGTCGCCCACCTCTCGCGCCTGCAGCCCTCGACTGTCCA 4590 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGG 7043 || | || || ||| | | |||||||||| | | || | ||| | | Sbjct 4589 GATACTCGCGCGACGCATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCG 4530 Query 7044 TGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACAC 7103 | | ||| | || || | ||||||||||||||||||| ||||||| |||| |||| | Sbjct 4529 CGCTGGTGTCGCCGCTGATGAACCACAGCAGCTCCTCGGCCACGCCGCGCCAGAACACGC 4470 Query 7104 GTTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGA 7160 | || ||||| |||||||| || | | ||| ||| || | || ||| | ||||| Sbjct 4469 GCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCTGAGGCTGAACCGCATCTGCGCGCCGA 4410 Query 7161 ACACGGAGAGGGTCCCCGTCCCGGTCCGGTC 7191 | || || || || |||||||| || ||||| Sbjct 4409 AGACCGACAGCGTGCCCGTCCCCGTGCGGTC 4379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448227267434400