Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq748 122 3e-23 >seq748 Length=18724 Score = 122 bits (134), Expect = 3e-23 Identities = 197/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| |||||||| | |||||||||| || | | | | Sbjct 5834 CCATGCACATGTGCGTGGCCTCGATGACCACGGCCACGCCCTTGGGCTCGATGACGCCCA 5775 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCG--AGCATA 31122 | |||| |||||||| | |||||||| |||||||| ||||||||||| || | | Sbjct 5774 TGATGGCGTTGGCGATCTGCTTGGTGAGCCGCTCCTGCACCTGCAGGCGGCGCGAGAAGA 5715 Query 31123 CATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCT 31182 | | | | | | || ||||||||| || |||| | ||||| || ||||||| Sbjct 5714 CCTCGCTGACT--CTGGCCAGCTTGCTGAGCCCCAGCACCTTGCCGTTGGGGATGTAGCC 5657 Query 31183 GATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGG 31240 ||| ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | | Sbjct 5656 GAT-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCG 5599 Query 31241 ATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 ||||||||||| | ||||||| ||| || | |||| Sbjct 5598 ATGTCGCGCACGATGACCATCTCGTCGTGGTCCTCC 5563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187275655118720