Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq2085 89.7 3e-13 >seq2085 Length=5363 Score = 89.7 bits (98), Expect = 3e-13 Identities = 121/164 (74%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 1160 CGCCGGAACGTGGTATCCGCATGGAA--CGTCGGTGACCTCAGCGACATGGCACTTCACC 1217 ||||| | |||| | || || ||||| || ||| | |||| || ||||| || | | Sbjct 4760 CGCCGCATCGTGCTGTCGGCGTGGAATCCGGCGG--ATCTCAATGAGATGGCGCTCCCGC 4817 Query 1218 CGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTG-CAGGTCTAC 1276 |||||||||| | | |||| | ||||| | ||||||| ||| || ||| ||| | ||| Sbjct 4818 CGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGCGAGCTTTC-CTGCCAGATGTAC 4876 Query 1277 CAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGC 1320 |||||| || |||||| || || ||||||||||||||||| Sbjct 4877 CAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAATATCGC 4920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296108570949270