Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq54 163 6e-35 seq14 161 2e-34 seq710 136 8e-27 seq374 131 4e-25 seq451 125 1e-23 seq50 109 1e-18 seq51 84.2 5e-11 >seq54 Length=76991 Score = 163 bits (180), Expect = 6e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| ||||| || | || || || |||||||||||||| Sbjct 57090 CCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 57031 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 57030 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 56971 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||| || || ||||| ||| | ||||| | |||||| | || || Sbjct 56970 ATGCCCTCCTTGTCTTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 56912 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||||||||| || |||| ||||| ||||| |||||||| ||| Sbjct 56911 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTTC 56860 >seq14 Length=110323 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 101134 CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 101075 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || || || ||||||| || || |||||| ||| Sbjct 101074 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 101015 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 101014 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 100956 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 100955 GTCGAGCGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 100908 >seq710 Length=19765 Score = 136 bits (150), Expect = 8e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 5326 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 5385 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || ||||||||||| ||||| || ||| || || | || Sbjct 5386 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 5444 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 5445 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 5504 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 5505 GATCTGCAT 5513 >seq374 Length=32324 Score = 131 bits (144), Expect = 4e-25 Identities = 568/881 (64%), Gaps = 23/881 (3%) Strand=Plus/Minus Query 229536 TTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTGG 229595 ||||| || || | | |||| | ||| | ||||| |||||||| | ||| | || ||| Sbjct 2181 TTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGG 2122 Query 229596 ACCACGGAGGAAGTCCCCCTAAATGCA-GACGTCGTCGACTGGCGCGAGAAACTCAACGA 229654 || | ||||| | ||| |||| ||| || |||||| | ||| || | || Sbjct 2121 ACGGCCGAGGAGCTGGACCTGG-TGCACGACCTCAAGGACTGG---GCGAACCTGACGGA 2066 Query 229655 CGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGTATCGT 229714 | | || || |||||||||||| | || | ||| || || | ||||||||| || Sbjct 2065 CAACGAGCGGTTCTTCATCAAGCACGTGCTGGCGTTCTTCGCTGCGAGCGACGGTATTGT 2006 Query 229715 GATGGAAAACTTGCAGACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACGGCAGTT 229774 || || ||| || | ||||||||| ||||| ||| || ||||| || || Sbjct 2005 GAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCTCGCTGCTT 1946 Query 229775 TTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCTTATTGA 229834 |||| | ||||| || || | || ||||| ||| | || || || || Sbjct 1945 CTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGA 1886 Query 229835 CGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAACATCCC 229894 | || ||| |||| ||| | | | ||| | ||| ||||| | ||||| Sbjct 1885 CACGTACATCAAGGACGCCGTGGAGAAGGACCACCTGCTGCGCGCGATCGAGACGATCCC 1826 Query 229895 GGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGGCTGGAACCCAGTAAATCGTTTG- 229953 | || | || ||||||| ||||| | |||||| || || || |||| Sbjct 1825 GTGCGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGTGTGTCGTCGTA 1766 Query 229954 --CAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGAGTTTCTG 230011 | |||||||| | |||| | ||| ||||| ||| | ||||| || ||||| Sbjct 1765 CCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTG 1706 Query 230012 CGCCATCTTTTGGCTACGCAACAAGGGCG---TCATGCCCGGGCTCGGTCTGTCGAACGA 230068 | ||||||| ||||| ||| ||| ||| ||||||| || || | | |||||||| Sbjct 1705 CTCCATCTTCTGGCT---CAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGA 1649 Query 230069 ATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGG-TCTTGTATTCGAAGC 230127 | |||||| | ||||| ||| | ||| | | || | || | || |||| || |||| Sbjct 1648 GCTGATCAGCCGTGACGAGGGTATGCACACGGACTTCG-CGTGCCTCATGTACTCCAAGC 1590 Query 230128 TAAATAACAAACTACCTTTCGAAACG-GTGAAACAAATCGTCACAGAAGTAGTTGCAAAT 230186 | ||||| || || || || ||| | | || || || | || | | Sbjct 1589 TGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATTGTGCGCGACGCGGTGGTGATC 1531 Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCT-TGCCGTCTTATCGGCATGAATGCTGATCT 230245 || | |||||| | ||||| | | ||| || | || ||||||||||| | | || Sbjct 1530 GAGCACGAGTTCGTGCGCGACTCGCTCCCTGTGGAG-CTGATCGGCATGAACTCGGCGCT 1472 Query 230246 CATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAA 230305 |||| | || || ||||| ||||| || || ||| | || |||| |||| | || Sbjct 1471 CATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGTTGTACTCGCT-GGGTGTGCCAA 1413 Query 230306 AG-TGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAA 230364 || | || ||| |||||||| |||| | ||||| | || || |||||||| || | Sbjct 1412 AGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCTCTCTCCAGGGCAAGA 1353 Query 230365 CTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGCC 230404 | ||||||||||| ||||| || |||| || || |||||| Sbjct 1352 CCAACTTCTTCGAGAAGCGCGTGGGCGAGTACTCCAAGGCC 1312 >seq451 Length=28809 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 316987 AGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTGA 317046 |||| ||||| || | |||| ||||| ||||| | ||||| || || | ||| Sbjct 16981 AGGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCCTTGCTGGGGAAGCCCTCGAGCTGG 17040 Query 317047 CCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCA 317106 ||||| |||| || | ||| || |||||||| ||| ||| ||||||||||| ||||| Sbjct 17041 CCGTTGGCAATGGCGCGCATGAGCGTCGACTTACCACAACCGTTGGGGCCGCACAGACCG 17100 Query 317107 TACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATAT 317166 || || | || ||| || || ||||| ||||||||| |||||| ||||||| || Sbjct 17101 TAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCGTAG 17160 Query 317167 GCCAGAGAGAACTCACAATCACACAGGTC 317195 || || |||||||| || | |||||||| Sbjct 17161 GCAAGCGAGAACTCGCAGTTGCACAGGTC 17189 Score = 111 bits (122), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| | ||||| ||||||||||| |||| |||| |||||| Sbjct 16165 TCCTTGTCCTCACCGGACTGGAAGCGCCACTGGATGTACTGGTTGGCCGTCTCGTCAAGG 16224 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 ||| ||| |||||||||||||||||||| |||||||| || | |||||| || ||| Sbjct 16225 TGAGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGCAGGGTGC 16284 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||| | || | |||| || || || |||| || || || || Sbjct 16285 TTCCACACCTGGCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 16344 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 16345 TTACCGGCACCGTT 16358 >seq50 Length=78893 Score = 109 bits (120), Expect = 1e-18 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | |||||| || || |||||||||||||| | Sbjct 18463 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 18522 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| Sbjct 18523 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 18577 >seq51 Length=78767 Score = 84.2 bits (92), Expect = 5e-11 Identities = 284/441 (64%), Gaps = 6/441 (1%) Strand=Plus/Plus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679 ||||||||| || || ||||| | ||||| | || | | ||||| || || || Sbjct 15037 AGACCAACCCGTACCGATACCCTCCGCGCCATTAATGAGCAGCATTGGGATGATAGGCAC 15096 Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 || || ||||||||| | ||||||||| | | || || || ||||||||| Sbjct 15097 GTAGTACACGGGCTCAACTGGGAAACCATCGTCATCAGCATATCGCAGCAGAGCATCATC 15156 Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 ||| ||| ||| || || || | || |||||||||| || | | || Sbjct 15157 TTCCTCAGGGAATACCAAACGTGTGTGCTTTTGAAGAATCGTGAAAATATAACGAGGGCT 15216 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGG---CAGTAGCCA 273856 || |||||||| || |||| | | || ||||| || || ||| ||| Sbjct 15217 TGCTGCATCCTTGCCTCCCTGCAAACGAGTTCCGAACTGGCCGGACGGATACAGCAGCGG 15276 Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916 | |||||| ||| ||| ||||||| ||||| || || || || || | || Sbjct 15277 A---AGGTTGTTAGAACCCACGAAATCCTGCGCCATGTTTACAATTGTAGAGTGCAATGA 15333 Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 |||||||||||| ||||| | ||||| | |||||| | ||| || ||||| Sbjct 15334 AGTCTCGCCGTGGTGGTAGGCCGTATGTTCACTGCAGTAACCAGCAAGCTGCGCCACCTT 15393 Query 273977 CACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTT 274036 ||| |||||||||| || ||||| | | | | | |||||| ||||| ||| || Sbjct 15394 CACCTCGCTCGTCAGCTTGCGCTTCAGACAAGCAAATAGCACCTTACGCTGTGAGATTTT 15453 Query 274037 GAACCCATCAACGACCGATGG 274057 || ||||| || || || || Sbjct 15454 GAGACCATCGACCACTGACGG 15474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046655110860580