Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq18578 107 4e-18 seq13395 91.5 3e-13 >seq18578 Length=55264 Score = 107 bits (118), Expect = 4e-18 Identities = 188/273 (69%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 319398 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 319457 || || ||||||| || || || |||||||| |||| ||||| || | ||||| Sbjct 18193 CTGCTCCACGAACCTTGAGAGGTTGCCCTTGTAGATCTTTAGCTTACGGGTC---TCGTA 18249 Query 319458 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 319517 || || || |||||||| | ||||||||| ||||||||||| ||||| || | || Sbjct 18250 GTGAATGATGTTCGTGCAAACCGTGTCGAGGAAGCCGGAGTCGTGCGACACCATGATGCT 18309 Query 319518 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAG 319577 || |||| | ||| | ||||||| | || ||| || || ||| | Sbjct 18310 CGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACATTCTTGACATCCAA 18369 Query 319578 ATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 319637 ||||| || || |||||||||||||| | | || ||| | ||||| ||||| || || Sbjct 18370 GTGGTTCGTGGGTTCGTCAAGAAGCAGAATGTCGGCCTTCTGCAGCATAGCACGAGCCAG 18429 Query 319638 AGCGAGTTTCATTTTCCACCCTCCGGAAAGAGT 319670 | | |||||| ||||| || || ||||| || Sbjct 18430 CTCCAATTTCATCTTCCAACCACCCGAAAGGGT 18462 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||| || Sbjct 17785 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCGAG 17844 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| ||||||||||| || ||||| |||||||| || | |||||| || || Sbjct 17845 GTGCGACTCAATGTGGTGGAATGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 17904 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || || |||| || | | ||||| |||| ||| || || || Sbjct 17905 CTTCCACACCTGGCCAGACGTGGGCTCGACCTCACCCGTCAGCATCTTGATCAGCGTCGA 17964 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGAT 319202 ||| || |||||||| |||| |||| |||| Sbjct 17965 TTTACCGGCACCGTTGGGTCCCAGCACAGCGAT 17997 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || ||||||||||| || ||||||||||| || || ||||| || Sbjct 18643 GGGGAAGCCCTCGAGCTGGCCGTTGGAGATGGCGCGCATCAGCGTCGACTTACCACAACC 18702 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || || || |||||||| |||| || || || ||| | || | |||||| || Sbjct 18703 GTTGGGGCCGCAAAGACCGTAACGGTGGCCACGCTTGAGGCGAAGGCGAGCGTTGTTAAG 18762 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACA 320020 ||||| | ||||| || || || || || || || | ||||| Sbjct 18763 CAGAATCATACCACCGTAGGCAAGCGAGAACTCGCAGTTACACA 18806 >seq13395 Length=1498 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 380 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 439 Query 165771 CCACG 165775 ||||| Sbjct 440 CCACG 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057559262023790