Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14049 143 3e-29 seq14048 143 3e-29 >seq14049 Length=3113 Score = 143 bits (158), Expect = 3e-29 Identities = 470/726 (65%), Gaps = 6/726 (1%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||| ||||| || ||||| |||| | ||||| ||| | |||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACT 1366 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 54068 ||||| || | ||| || || ||||| || || || || | ||| || || || || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 || || | | | || |||||| || ||||| ||||| |||||| | | Sbjct 1305 CAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGA 1247 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 | || | ||||||||| |||||||| |||| | ||| |||||| ||||| Sbjct 1246 ACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTC 1187 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 54248 |||| || | || | ||| |||| ||| | ||||| | ||| || || || ||||||| Sbjct 1186 CCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGG 1127 Query 54249 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 54306 | | || ||||| ||| ||| ||||| |||||||||||| | | | |||| Sbjct 1126 AGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT-- 1069 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 || || || || ||| || ||||| | ||||| | || | ||| || |||||||| Sbjct 1068 GCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 1009 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 ||| || || ||| |||| || | || || |||| || | || || Sbjct 1008 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGT 949 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 ||| |||||||| | || || | |||||||| || | || | || | || | ||| Sbjct 948 TCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 889 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 ||||| | || | | || ||| | || || || | || || ||||| | ||| Sbjct 888 CGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCAT 829 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 ||||| || | || |||| ||| ||| | | | | | |||| | ||||| || Sbjct 828 CTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACGT 769 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 || || ||||| |||| |||| |||||| | |||| ||||| | |||||||| | Sbjct 768 CTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTC 709 Query 54667 ATCCTT 54672 ||||| Sbjct 708 GTCCTT 703 >seq14048 Length=3126 Score = 143 bits (158), Expect = 3e-29 Identities = 470/726 (65%), Gaps = 6/726 (1%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||| ||||| || ||||| |||| | ||||| ||| | |||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACT 1366 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 54068 ||||| || | ||| || || ||||| || || || || | ||| || || || || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 || || | | | || |||||| || ||||| ||||| |||||| | | Sbjct 1305 CAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGA 1247 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 | || | ||||||||| |||||||| |||| | ||| |||||| ||||| Sbjct 1246 ACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTC 1187 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 54248 |||| || | || | ||| |||| ||| | ||||| | ||| || || || ||||||| Sbjct 1186 CCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGG 1127 Query 54249 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 54306 | | || ||||| ||| ||| ||||| |||||||||||| | | | |||| Sbjct 1126 AGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT-- 1069 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 || || || || ||| || ||||| | ||||| | || | ||| || |||||||| Sbjct 1068 GCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 1009 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 ||| || || ||| |||| || | || || |||| || | || || Sbjct 1008 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGT 949 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 ||| |||||||| | || || | |||||||| || | || | || | || | ||| Sbjct 948 TCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 889 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 ||||| | || | | || ||| | || || || | || || ||||| | ||| Sbjct 888 CGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCAT 829 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 ||||| || | || |||| ||| ||| | | | | | |||| | ||||| || Sbjct 828 CTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACGT 769 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 || || ||||| |||| |||| |||||| | |||| ||||| | |||||||| | Sbjct 768 CTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTC 709 Query 54667 ATCCTT 54672 ||||| Sbjct 708 GTCCTT 703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593576635449840