Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq17656 235 6e-57 >seq17656 Length=11375 Score = 235 bits (260), Expect = 6e-57 Identities = 500/737 (68%), Gaps = 17/737 (2%) Strand=Plus/Plus Query 145642 AGCCTGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTG 145701 ||| | || || ||||| ||| | | || ||||| || || ||||| |||||||| Sbjct 727 AGCGTCGGGAATGGCCGTGGGGTTCGCGTGAGCTGCTTCTGAAGAGGCTCAACGTGGTTC 786 Query 145702 AGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGG 145761 ||||| || |||||||| || | ||||||||||| || || || | || || | | Sbjct 787 AGGTAAACATGCGCGTCACCAATCACGTGGATGAATTCACCTGGTTTCAGCCCGGCCACT 846 Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 || || || | || ||||| | |||||| || |||||||| ||||| || || ||| Sbjct 847 TGTGCCACTAGCCGCGTGAGCAGCGCGTAGCTTGCAATGTTGAACGGCACGCCGAGTCCC 906 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881 ||||| | ||||||||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 907 ATGTCGGCTGAGCGCTGGTACATCTGGCAGGAGAGCTCTCCGTCCGCCACGTAGAACTGG 966 Query 145882 CACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTG 145941 || | | ||| || || ||||| ||||| || ||| || || |||||||| || | Sbjct 967 CAGAACATGTGACACGGTGGCAGCGCCATCTCGTTCAGATCGGCGGGGTTCCACGCAGAC 1026 Query 145942 AGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGC 145998 | || | ||| || ||| ||||| || | || |||| || || Sbjct 1027 AAAACAA---TCCGGCGGTCGGTCGGGTTGGTCCGCAGCTTGTGAATCACCTCAGCAAGT 1083 Query 145999 TGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCCCCGAAGTG 146057 |||||||| ||||| || ||| || | | || | |||| ||| ||| || ||||| Sbjct 1084 TGGTCCACACCCTGTCCAGTGTAGTCCG-CATGCATGTCCGTATACTTGGCTCCAAAGTG 1142 Query 146058 CCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGC 146117 | ||||||||| |||||||| || || ||||| || |||| ||| ||| Sbjct 1143 GCGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCCCACTTCCCGCGATTCCAACCCTCG 1202 Query 146118 CCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTC-GCGGAGA 146176 | | | | | || || || || || |||||||||| | || || || || | | Sbjct 1203 ACTGTCCAAATACTCTCGAGATCCATTTCCGTCCCAGATGTGGATATCCTTCTGCTG-CA 1261 Query 146177 GCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCC 146236 || | | | |||| || || | |||||| |||||||| ||| || || | || Sbjct 1262 GCGTGTGCGCATTCGTGTCGCCACTAACGAACCACAGCAGCTCCTCGGCCACACCGCGCC 1321 Query 146237 AGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCGCAGGGAGTACTTGGCCT 146293 ||||||| | |||||| || ||||| |||||| | | ||| || | || | || Sbjct 1322 AGAAGACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCTGAGACTGAACCTCATCT 1381 Query 146294 GGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCC--TGTCCCCCCTGCGCACCCCGTT 146351 | | || |||| |||| |||||| ||||| | | ||||| ||| || ||| || Sbjct 1382 GCGCTCCAAAGAGCGACAAGGTGCCTGTCCCCGTGCGGTCTCCCCTCTGAGCTCCCTGT- 1440 Query 146352 CGCCAGGATCTCCCTGA 146368 | |||||||| || || Sbjct 1441 -GTCAGGATCTTCCGGA 1456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589932725373320