Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq18936 291 8e-74 seq19195 156 4e-33 seq18510 150 2e-31 seq17350 140 3e-28 seq18987 98.7 1e-15 seq9691 91.5 2e-13 seq15076 82.4 8e-11 >seq18936 Length=24579 Score = 291 bits (322), Expect = 8e-74 Identities = 479/686 (70%), Gaps = 6/686 (1%) Strand=Plus/Plus Query 116747 ATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC 116806 ||||||||||||||||| || || || ||||| ||||||||||| |||||||| |||| Sbjct 20553 ATCAAGCACGTGCTGGCGTTCTTTGCTGCCAGTGACGGCATCGTGAACGAGAACCTGGCA 20612 Query 116807 GAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 | ||| | |||||||||||| | || || || |||||||||||||| |||||| Sbjct 20613 ATGAACTTCAGCAACGAGGTGCAGGTGCCGGAAGCTCGCTGCTTCTACGGCTTCCAGATC 20672 Query 116867 GCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCT 116926 ||||| |||||| | ||||||||| |||||||| || |||||||||||| | | Sbjct 20673 GCCATCGAGAACATCCACTCGGAAGTGTATTCGCTGCTGATCGACACGTACATCAAGGAT 20732 Query 116927 TCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG 116986 | | ||||||| |||| || |||||||||||||| |||||||| | ||||| Sbjct 20733 GCAGTGGAGAAGGATTATTTGCTGCGAGCCATCGAGACGATCCCGTGCGTGGAGAAGAAG 20792 Query 116987 GCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 || ||||| || || ||| || | | | | | | | | ||||| ||| || Sbjct 20793 GCTCGCTGGGCTCTTCGGTGGTGCGACCCTCGTGTGTCGTCGTACCCTGAGCGTCTGCTG 20852 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || ||||| || || |||||| | ||||| |||||| ||| | | || || |||||| Sbjct 20853 GCGTTCGCCGCGGTAGAGGGCATTTTCTTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTC 20912 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| ||||| |||||||| ||||||| ||| ||||| |||||| | || ||| Sbjct 20913 AAGAAGCGCGGTCTCATGCCTGGCCTGAGCTTCTCGAACGAACTCATCAGTCGTGATGAG 20972 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTG---CAGCGACCGAGC 117223 || |||| ||||| || || |||||| | | | ||||| ||| ||| | Sbjct 20973 GGCATGCACACGGACTTCGCGTGCCTGCTGTACTCGAAGCTGGTGAACAAGCTGCCG-GA 21031 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 | | |||| | || |||||||| ||||| || || |||||||| ||| | | Sbjct 21032 GAGCCGCGTG-CA-CGAGATCGTGCGTGACGCCGTGGCGATCGAGCACGAGTTCGTGCGC 21089 Query 117284 GAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAG 117343 || ||||||| ||| || | || | |||| | |||| || ||||||||| Sbjct 21090 GACTCGCTGCCCGTGGAGCTCATCGGCATGAATTCGGCGCTCATGTGCCAGTACATCGAG 21149 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAAC 117403 ||||| |||||| | |||||| | ||||| | ||||| ||||||| | ||| Sbjct 21150 TTCGTGGCCGACCGCCTGCTGTACTCGCTGGGTGTGTCCAAGATCTACAACGTGAAGAAC 21209 Query 117404 CCGCTGGACTTTATGAACCTCATCTC 117429 ||| | |||| ||| || | ||||| Sbjct 21210 CCGTTCGACTGGATGGACATGATCTC 21235 >seq19195 Length=70740 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | |||||||| || ||||| ||||||| || | | Sbjct 21805 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 21746 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||| | ||||| |||||||||||| | ||||| Sbjct 21745 GACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCA 21687 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 21686 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTAAGCGACTACAA 21627 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| |||||| | |||||||| |||||| |||| || | ||||| Sbjct 21626 CATCCAAAAGGAGTCTACGCTGCACCTAGTGCTGCGTCTGCGTGGCGG 21579 Score = 136 bits (150), Expect = 4e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 ||| | ||||| | ||||| |||||||||||| | |||||||| || | |||| ||| Sbjct 21955 AAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGATCTTCGCC 21896 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 ||||| |||||||| |||| ||||| || | |||||||||||||||||||||| | ||| Sbjct 21895 GGCAAGCAGCTGGAGGACGGCCGCACGCTAAGCGACTACAACATCCAGAAGGAGTCTACG 21836 Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| || ||| |||| || | |||||| Sbjct 21835 CTGCACCTGGTGCTGCGTCTGCGCGGCGGC 21806 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || ||| | |||||||| || ||||| ||||||| || | | ||| | Sbjct 22252 TTCGTGAAGACGTTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCGGACTCGATC 22193 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | | ||| | ||||| | ||||| |||||||||||| | |||||||| || | Sbjct 22192 GACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTG 22133 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 |||| ||| ||||| |||||||| |||| ||||| || | ||||||||||||||| Sbjct 22132 ATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTAAGCGACTACAACATCCA 22077 >seq18510 Length=33167 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||||| |||||||| || |||||| ||||||| || || Sbjct 31486 AAGATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACCCTCGACGTGGAGCCC 31545 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | | | ||| | || |||| ||||| || ||||| || | ||| Sbjct 31546 TCGGACTCTATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGAC 31605 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||| Sbjct 31606 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 31665 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| | ||| |||| || ||| |||| || | || ||| Sbjct 31666 AACATCCAGAAGGAGTCGACGTTGCACCTGGTGCTGCGTCTGCGTGGTGGC 31716 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| || |||||| ||||||| || || | Sbjct 31717 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACAATCACCCTCGACGTGGAGCCCTCG 31776 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | ||| | || |||| ||||| || ||||| || | |||||| Sbjct 31777 GACTCTATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAG 31836 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| |||| ||||| || | |||||||||| Sbjct 31837 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 31896 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | ||| |||| || ||| |||| || | || ||| Sbjct 31897 ATCCAGAAGGAGTCGACGTTGCACCTGGTGCTGCGTCTGCGTGGTGGC 31944 >seq17350 Length=35721 Score = 140 bits (154), Expect = 3e-28 Identities = 147/191 (77%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 6592 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 6533 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||||| | | |||| ||||| | ||||| | ||||| ||||||||||| | ||||| Sbjct 6532 GACAGCATTGACAACG-TCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCA 6474 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 6473 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 6414 Query 40869 CATCCAGAAGG 40879 ||||||||||| Sbjct 6413 CATCCAGAAGG 6403 >seq18987 Length=31229 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 17941 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 18000 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| ||||||||| || ||| | || || | Sbjct 18001 ACTCTTTCGGACTACAACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTTCGTCTGCGT 18060 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 18061 GGTGGTGGC 18069 >seq9691 Length=8707 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| |||||||| |||||||||| | || || || || | | ||| Sbjct 170 GAGCCGTTCCTGGTGGAGAACCCGAACCGGTTCGTGCTGTTTCCGATCCATGAGCACGAC 111 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 ||||| |||||||| ||||| ||||| ||||||||||| | |||||| |||||||| Sbjct 110 GTGTGGAAAATGTACAAGAAGGCGGAGGCATCGTTCTGGACGGCTGAGGAGCTGGACCTG 51 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTT 116745 | ||| | ||||||| | ||| ||||||||||| || || Sbjct 50 GTTCACGACCTCAATGACTGGGCGAAGCTGACGGACAACGAGCGGCACTT 1 >seq15076 Length=8655 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| |||||||| |||||||||| | || || || || | | ||| Sbjct 8538 GAGCCGTTCCTGGTGGAGAACCCGAACCGGTTCGTGTTGTTTCCGATCCATGAGCACGAC 8597 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACC 116693 ||||| |||||||| ||||| ||||| ||||||||||| | |||||| |||||| Sbjct 8598 GTGTGGAAAATGTACAAGAAGGCGGAGGCATCGTTCTGGACTGCTGAGGAGCTGGACC 8655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515093402792080