Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq18510 136 3e-27 seq19195 129 5e-25 seq14049 122 8e-23 seq14048 122 8e-23 seq17350 93.3 4e-14 >seq18510 Length=33167 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| ||||||| ||||| || Sbjct 31701 CAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 31642 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| |||| ||||||||||| || || || ||||| |||||||| Sbjct 31641 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTC 31582 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | || | | ||||| | ||| || |||| ||| | ||| Sbjct 31581 CTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGATCGT 31522 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || || |||||||| Sbjct 31521 CTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31489 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| ||||||| ||||| || Sbjct 31929 CAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 31870 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| |||| ||||||||||| || || || ||||| |||||||| Sbjct 31869 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTC 31810 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | || | | ||||| | ||| || |||| ||| | || Sbjct 31809 CTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGATTGT 31750 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || || || ||||||||| Sbjct 31749 CTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 31716 >seq19195 Length=70740 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||| | |||||||| ||||| |||||||| ||||| | ||||| || Sbjct 21593 CAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGGCCGTC 21652 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| | ||||||||| || || || |||||||||||||| Sbjct 21653 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 21712 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| || || || | |||| | ||||| ||| || |||| || | ||| Sbjct 21713 TTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGT 21772 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| |||| || || || || ||||||||| Sbjct 21773 CTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 21806 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | |||||||| || || |||||||| ||||| Sbjct 21807 CCGCCGCGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTT 21866 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| | ||||||||| || || || Sbjct 21867 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGG 21926 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAAC 118663 ||||||||||||||| ||||| || || || Sbjct 21927 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCAC 21958 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 118554 TGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGA 118613 || |||||||| ||||| | ||||| ||||| ||||| || || ||| |||| | | Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 |||||||| || || || ||||||||||||||| ||||| || || || | |||| Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 22196 Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | ||||| ||| || |||| || | ||| ||||| |||| || || || || Sbjct 22197 GAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAA 22252 >seq14049 Length=3113 Score = 122 bits (134), Expect = 8e-23 Identities = 306/458 (67%), Gaps = 8/458 (2%) Strand=Plus/Minus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || ||||||||||| || || |||| ||| ||||| ||||| ||| || Sbjct 2541 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGT 2482 Query 132977 CACCACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAA 133036 || | | || || ||||| | | |||||||| || ||||| ||| | Sbjct 2481 CAGCTTGCTGATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTA 2422 Query 133037 AGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTT 133096 | | ||||| || | || | | || ||| ||||||||||| ||||||| Sbjct 2421 GGCGCCGCGGTCCGCCGACAAATCCAGAATGGCCTTCTGCTTGATCTCCCACACCGTCTT 2362 Query 133097 GAAGAGATTCTTGACATGCTGT--GGTATTT-CGTCAATGTTCTGCACGGACCCGTTTTC 133153 | | | |||||| ||||| || || | ||| ||||||||||| || || Sbjct 2361 GTACTTGTCCTTGAC--GCTGTCCGGGATCGACCTCACC-TTCTGCACGGAGCCACCGTC 2305 Query 133154 GGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGAC 133213 |||| |||| ||| |||| || || || | ||| | | |||||| || | || | Sbjct 2304 AGCCAGGATCTGGTTACGCACCTCGGGCGTCCAGATGCCCAAATCGATGAGTTCATTCAT 2245 Query 133214 GAGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCG 133272 || |||| ||| || | | |||| ||||||||| || || || | | || | || | Sbjct 2244 CAGGTACTTGTTCACGATCGTGAA-CTCGCCGGCCAGCACACGGCGGTTGTACATGTTGG 2186 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 |||||||||| || | || |||||||||||||| ||||| ||||||| || ||||||| Sbjct 2185 ACGTGAACGGCTCAATGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAAGCAGTGGGCA 2126 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTG 133370 | ||||| | || ||||| | | ||||| |||| Sbjct 2125 TAGGAGCCACGAGCAGCGAGTTGCGCAGGCCGTGCTTG 2088 >seq14048 Length=3126 Score = 122 bits (134), Expect = 8e-23 Identities = 306/458 (67%), Gaps = 8/458 (2%) Strand=Plus/Minus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || ||||||||||| || || |||| ||| ||||| ||||| ||| || Sbjct 2541 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGT 2482 Query 132977 CACCACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAA 133036 || | | || || ||||| | | |||||||| || ||||| ||| | Sbjct 2481 CAGCTTGCTGATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTA 2422 Query 133037 AGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTT 133096 | | ||||| || | || | | || ||| ||||||||||| ||||||| Sbjct 2421 GGCGCCGCGGTCCGCCGACAAATCCAGAATGGCCTTCTGCTTGATCTCCCACACCGTCTT 2362 Query 133097 GAAGAGATTCTTGACATGCTGT--GGTATTT-CGTCAATGTTCTGCACGGACCCGTTTTC 133153 | | | |||||| ||||| || || | ||| ||||||||||| || || Sbjct 2361 GTACTTGTCCTTGAC--GCTGTCCGGGATCGACCTCACC-TTCTGCACGGAGCCACCGTC 2305 Query 133154 GGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGAC 133213 |||| |||| ||| |||| || || || | ||| | | |||||| || | || | Sbjct 2304 AGCCAGGATCTGGTTACGCACCTCGGGCGTCCAGATGCCCAAATCGATGAGTTCATTCAT 2245 Query 133214 GAGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCG 133272 || |||| ||| || | | |||| ||||||||| || || || | | || | || | Sbjct 2244 CAGGTACTTGTTCACGATCGTGAA-CTCGCCGGCCAGCACACGGCGGTTGTACATGTTGG 2186 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 |||||||||| || | || |||||||||||||| ||||| ||||||| || ||||||| Sbjct 2185 ACGTGAACGGCTCAATGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAAGCAGTGGGCA 2126 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTG 133370 | ||||| | || ||||| | | ||||| |||| Sbjct 2125 TAGGAGCCACGAGCAGCGAGTTGCGCAGGCCGTGCTTG 2088 >seq17350 Length=35721 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 6405 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6464 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| ||||| || || || | || Sbjct 6465 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 6524 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 6525 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 6584 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 6585 ATCTGCATG 6593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433727123012836