Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq17350 134 2e-26 seq18510 116 4e-21 seq19195 114 1e-20 seq18987 82.4 9e-11 >seq17350 Length=35721 Score = 134 bits (148), Expect = 2e-26 Identities = 146/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 6403 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6462 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | ||| | || |||||||||| |||||| || |||| ||| | Sbjct 6463 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CGTTG 6521 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | ||||| || ||||| || | ||||||||| |||||||| || ||||| ||| Sbjct 6522 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 6581 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 6582 AAGATCTGCAT 6592 >seq18510 Length=33167 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| ||||| || |||||| || || ||||| || ||| || || | Sbjct 31704 ACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 31645 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| |||||||| || || ||||||||||| | ||| | || ||||| Sbjct 31644 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTT 31585 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| || || || || | | | | | ||| | ||||| |||| ||||| Sbjct 31584 GTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGAT 31525 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || |||||||| |||||||| || ||||| ||||| || Sbjct 31524 CGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTT 31486 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| ||||| || |||||| || || ||||| || ||| || || | Sbjct 31932 ACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 31873 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| |||||||| || || ||||||||||| | ||| | || ||||| Sbjct 31872 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTT 31813 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| || || || || | | | | | ||| | ||||| |||| ||||| Sbjct 31812 GTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGAT 31753 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| |||||||| || ||||| ||||| Sbjct 31752 TGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31717 >seq19195 Length=70740 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | |||| || ||||||||| || ||||| || || || || | Sbjct 21590 ACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGGCC 21649 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || | ||||||||||| | || | || |||||| Sbjct 21650 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTT 21709 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| |||||| || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 21710 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 21768 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| | |||||| || ||||| ||||| Sbjct 21769 TCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 21805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058 || || ||||| || || || || |||| || |||||||| || ||||| || | Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118 ||||||||||| | || | || ||||||||| |||||| || || | | | | | Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 22196 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGA 43176 | ||| || ||||| |||| |||||| || |||||||| | |||||| || |||| Sbjct 22197 GAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGA 22254 >seq18987 Length=31229 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| |||| ||||||||||| || || ||||| || | ||||| || | Sbjct 18054 ACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCC 17995 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 17994 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 17947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571677983585240