Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq14049 159 7e-34 seq14048 159 7e-34 seq16850 113 1e-19 seq5559 113 1e-19 seq18936 104 5e-17 >seq14049 Length=3113 Score = 159 bits (176), Expect = 7e-34 Identities = 858/1354 (63%), Gaps = 59/1354 (4%) Strand=Plus/Plus Query 248418 CATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGC 248477 ||||||| | ||||| || |||||| || | ||| |||||||| ||| |||| Sbjct 321 CATGTACGTGGTTAAGCGCGATGGGCGCTCGGAGGAAGTTAAGTTCGACAAGATCACGGC 380 Query 248478 GCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGC 248537 |||||||| |||||||| || || ||| | || ||| || || || ||| | Sbjct 381 GCGCATCACCAAGCTCTGCTACGGCCTGAACCCGGACTATGTGGACGCCGTCAAGATCTC 440 Query 248538 CCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGC 248597 ||||| || | | ||||| ||| | || || || ||| | || |||||| | || Sbjct 441 GCAGAAGGTCGTAGCCGGCGTGTACCCTGGCGTCACCACGTCCGAGCTGGACGAGCTGGC 500 Query 248598 TGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAG 248657 || |||||||| |||||| | | ||||| |||| ||| |||||| | | | Sbjct 501 GGCCGAGACGGCCGCGTACCAGAGCACACAGCACCCGGACTTCTCCAAGCTGGCGGCGCG 560 Query 248658 GATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGC--T 248715 || ||||| || | || ||||| | ||||| || ||| || | ||| | | Sbjct 561 TATTGCCGTGTCCAACCTGCACAAGAACACGAACAAGGTCTTCAGTGACAACATCGAGGT 620 Query 248716 GACCTACA------TGC-CTATGGGATGG------------------TCGCCGATGACGT 248750 | | ||| ||| | | || || ||||||| ||||| Sbjct 621 GTTCCACAAGAACGTGCACGAGAAGACGGGCGCCGCTGCGCCGCTCATCGCCGACGACGT 680 Query 248751 CCAC---ACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAA 248807 || | |||||| ||| |||| | | ||| || || ||| | ||| || Sbjct 681 GTACGAGATCGTCATGCAGCACAAGGACGAGCTCA---ACTCGGCCATTATCCACGACAG 737 Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 || || || ||||| | ||||| ||||| ||| |||||| || ||| ||| | | Sbjct 738 GGACTTTGAATACGACTACTTTGGCTTCAAGACGTTGGAGAGGGGCTACCTCTTCAGAGT 797 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | ||||| ||||||| || ||||| ||| | ||||| ||||| | || || || Sbjct 798 GAACGGCAAAGTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCA 857 Query 248928 CAAGGATGACATAGAGAGCGT-GCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGA 248986 |||| ||||| | |||| ||| |||||||| ||| | | | | Sbjct 858 CAAGACGGACATCCA-AGCGGCGCTGCAGACGTACGAGCTCATGTCGCAGAAGTTCTTCA 916 Query 248987 CACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCT 249046 | || || || || ||||| || || || || || | |||||| ||||||| Sbjct 917 CGCACGCGACGCCCACGCTGTTTAATGCAGGAACGCCGCGCCCGCAGCTGTCGTCGTGCT 976 Query 249047 TTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGG 249106 | | || |||||||| |||||||| | || ||||| || |||||||| || ||| | Sbjct 977 TCTTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCG 1036 Query 249107 CGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGG 249166 || || || || | || || || || || || | ||| || || || | | Sbjct 1037 CGTGCATCTCCAAGTGGGCTGGAGGTATTGGCATCAGTATGCACAATATTCGTGCCACGA 1096 Query 249167 GTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCT 249226 |||||| || || || || | |||| ||| | ||| | || || | Sbjct 1097 ACAGCTACATCCGCGGCACCAACGGCTCCTCCAATGGGATCATCCCCATGCTCAGAGTGT 1156 Query 249227 TTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCA 249283 || | ||| || | | | |||||| || || || ||||| |||||||||| Sbjct 1157 TTAACGACACGGCTCGCTATGTGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTCGCCA 1216 Query 249284 TGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACG 249343 | || ||||| |||||| ||||| | || ||||||||||| || |||||| ||| Sbjct 1217 TTTACTTGGAGCCGTGGCATGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACG 1276 Query 249344 GCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCA 249403 | |||||||| | ||||| ||| | ||||||| ||||||||| ||||| |||||| Sbjct 1277 GTAACGAGCTGCACCGTGCGCGCGACTTGTTCTACGCCCTGTGGGTGCCCGACCTGTTCA 1336 Query 249404 TGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT-TCTCCGTCCGACGCCCCGGAC 249462 || |||||| ||||| | ||| | |||| | || || | |||| ||| || || || Sbjct 1337 TGAAGCGCGTCGAGGCCAATGGCAAGTGGA-GTTTGTTCTGTCCGAACGAAGCTCCTGAT 1395 Query 249463 CTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGA-ATCCAAC 249519 ||| | | || | || ||||| || || || |||| ||||| | | Sbjct 1396 CTCTACAAGTGCTGGGGTGAGGAGTTCGA--AACGCTGTACGAGAAGTACGAGAAGGAGG 1453 Query 249520 GGCAT--CGGCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCC 249574 | | | | ||||||| ||||| || | | || || || | | |||| | | Sbjct 1454 GACGTGCCCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCA---TCCTGGACGCGC 1510 Query 249575 AGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAAC 249633 |||| ||||| || | ||||| | || | | ||| |||||| |||| |||| ||| Sbjct 1511 AGATTGAGACGGGCGTGCCGT-TCATGCTCTACAAGGACGCGGCCAACCGCAAGTCGAAC 1569 Query 249634 CAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGC--AGAGGTGATTCAATACT 249691 || | | | || || || |||||||| | | || ||||| |||||||| | ||| Sbjct 1570 CAGCAGAACCTCGGCACGATCCGCTC-TAGCAACT-TGTGCTGTGAGGTGATGGAGTACA 1627 Query 249692 CGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| || ||| | || || ||||||||||| Sbjct 1628 CGTCACCAGACGAGGTGGCGGTGTGCAACCTGGC 1661 >seq14048 Length=3126 Score = 159 bits (176), Expect = 7e-34 Identities = 858/1354 (63%), Gaps = 59/1354 (4%) Strand=Plus/Plus Query 248418 CATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGC 248477 ||||||| | ||||| || |||||| || | ||| |||||||| ||| |||| Sbjct 321 CATGTACGTGGTTAAGCGCGATGGGCGCTCGGAGGAAGTTAAGTTCGACAAGATCACGGC 380 Query 248478 GCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGC 248537 |||||||| |||||||| || || ||| | || ||| || || || ||| | Sbjct 381 GCGCATCACCAAGCTCTGCTACGGCCTGAACCCGGACTATGTGGACGCCGTCAAGATCTC 440 Query 248538 CCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGC 248597 ||||| || | | ||||| ||| | || || || ||| | || |||||| | || Sbjct 441 GCAGAAGGTCGTAGCCGGCGTGTACCCTGGCGTCACCACGTCCGAGCTGGACGAGCTGGC 500 Query 248598 TGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAG 248657 || |||||||| |||||| | | ||||| |||| ||| |||||| | | | Sbjct 501 GGCCGAGACGGCCGCGTACCAGAGCACACAGCACCCGGACTTCTCCAAGCTGGCGGCGCG 560 Query 248658 GATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGC--T 248715 || ||||| || | || ||||| | ||||| || ||| || | ||| | | Sbjct 561 TATTGCCGTGTCCAACCTGCACAAGAACACGAACAAGGTCTTCAGTGACAACATCGAGGT 620 Query 248716 GACCTACA------TGC-CTATGGGATGG------------------TCGCCGATGACGT 248750 | | ||| ||| | | || || ||||||| ||||| Sbjct 621 GTTCCACAAGAACGTGCACGAGAAGACGGGCGCCGCTGCGCCGCTCATCGCCGACGACGT 680 Query 248751 CCAC---ACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAA 248807 || | |||||| ||| |||| | | ||| || || ||| | ||| || Sbjct 681 GTACGAGATCGTCATGCAGCACAAGGACGAGCTCA---ACTCGGCCATTATCCACGACAG 737 Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 || || || ||||| | ||||| ||||| ||| |||||| || ||| ||| | | Sbjct 738 GGACTTTGAATACGACTACTTTGGCTTCAAGACGTTGGAGAGGGGCTACCTCTTCAGAGT 797 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | ||||| ||||||| || ||||| ||| | ||||| ||||| | || || || Sbjct 798 GAACGGCAAAGTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCA 857 Query 248928 CAAGGATGACATAGAGAGCGT-GCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGA 248986 |||| ||||| | |||| ||| |||||||| ||| | | | | Sbjct 858 CAAGACGGACATCCA-AGCGGCGCTGCAGACGTACGAGCTCATGTCGCAGAAGTTCTTCA 916 Query 248987 CACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCT 249046 | || || || || ||||| || || || || || | |||||| ||||||| Sbjct 917 CGCACGCGACGCCCACGCTGTTTAATGCAGGAACGCCGCGCCCGCAGCTGTCGTCGTGCT 976 Query 249047 TTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGG 249106 | | || |||||||| |||||||| | || ||||| || |||||||| || ||| | Sbjct 977 TCTTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCG 1036 Query 249107 CGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGG 249166 || || || || | || || || || || || | ||| || || || | | Sbjct 1037 CGTGCATCTCCAAGTGGGCTGGAGGTATTGGCATCAGTATGCACAATATTCGTGCCACGA 1096 Query 249167 GTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCT 249226 |||||| || || || || | |||| ||| | ||| | || || | Sbjct 1097 ACAGCTACATCCGCGGCACCAACGGCTCCTCCAATGGGATCATCCCCATGCTCAGAGTGT 1156 Query 249227 TTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCA 249283 || | ||| || | | | |||||| || || || ||||| |||||||||| Sbjct 1157 TTAACGACACGGCTCGCTATGTGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTCGCCA 1216 Query 249284 TGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACG 249343 | || ||||| |||||| ||||| | || ||||||||||| || |||||| ||| Sbjct 1217 TTTACTTGGAGCCGTGGCATGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACG 1276 Query 249344 GCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCA 249403 | |||||||| | ||||| ||| | ||||||| ||||||||| ||||| |||||| Sbjct 1277 GTAACGAGCTGCACCGTGCGCGCGACTTGTTCTACGCCCTGTGGGTGCCCGACCTGTTCA 1336 Query 249404 TGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT-TCTCCGTCCGACGCCCCGGAC 249462 || |||||| ||||| | ||| | |||| | || || | |||| ||| || || || Sbjct 1337 TGAAGCGCGTCGAGGCCAATGGCAAGTGGA-GTTTGTTCTGTCCGAACGAAGCTCCTGAT 1395 Query 249463 CTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGA-ATCCAAC 249519 ||| | | || | || ||||| || || || |||| ||||| | | Sbjct 1396 CTCTACAAGTGCTGGGGTGAGGAGTTCGA--AACGCTGTACGAGAAGTACGAGAAGGAGG 1453 Query 249520 GGCAT--CGGCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCC 249574 | | | | ||||||| ||||| || | | || || || | | |||| | | Sbjct 1454 GACGTGCCCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCA---TCCTGGACGCGC 1510 Query 249575 AGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAAC 249633 |||| ||||| || | ||||| | || | | ||| |||||| |||| |||| ||| Sbjct 1511 AGATTGAGACGGGCGTGCCGT-TCATGCTCTACAAGGACGCGGCCAACCGCAAGTCGAAC 1569 Query 249634 CAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGC--AGAGGTGATTCAATACT 249691 || | | | || || || |||||||| | | || ||||| |||||||| | ||| Sbjct 1570 CAGCAGAACCTCGGCACGATCCGCTC-TAGCAACT-TGTGCTGTGAGGTGATGGAGTACA 1627 Query 249692 CGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| || ||| | || || ||||||||||| Sbjct 1628 CGTCACCAGACGAGGTGGCGGTGTGCAACCTGGC 1661 >seq16850 Length=28730 Score = 113 bits (124), Expect = 1e-19 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || ||||| | |||||||| ||||| ||||| |||||||| ||||||||| | || | Sbjct 21959 ATGGCACAGCGACTCTGAATGGGTTCAATGATCTTGGTGGAATTGTTGCAGGCCATTGCG 22018 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 |||||||| ||| |||| | | ||||| | || ||||||||||| ||| ||| Sbjct 22019 AACCGCGTGGTGGCCGAGAAGATCTCCATCGTACGACGCAGCGCCTGCTGAGCCGCAGCC 22078 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||||||||| |||||||| || | || ||||| Sbjct 22079 GTCATCGAGTCCGCCTCGTCCAGGATCACGATCTT 22113 >seq5559 Length=11199 Score = 113 bits (124), Expect = 1e-19 Identities = 259/382 (68%), Gaps = 10/382 (3%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || || || ||| |||| || || || || ||||||||||| ||||| | || Sbjct 10871 CTGCCGCACTTACTGTTCTACGGACCCCCAGGCACGGGCAAGACGTCGACCATTGTCGCT 10812 Query 254061 CTGGCCCG--AACCCTGTTGGGCG-AGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAAC 254117 ||| || ||| || | | || | || || | ||| | || ||||||||| Sbjct 10811 GTGGGGCGTCAACTCTTTGGTACGGATTTCCGCAAGAATGGCCGCTTCCTGGAGCTGAAC 10752 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATG 254177 || || || || || || | | || || || || ||| |||||| ||| || || Sbjct 10751 GCATCCGATGACCGAGGTATTAAGGTGGTGCGTGAGAAGGTCAAGAGCTTCGCCCAGGGA 10692 Query 254178 TCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCG 254237 | || | | ||| | ||| |||||||||||| || | | ||||| ||||| Sbjct 10691 GCCATCA-GCAGCACCAGTG-GCCTG-CCGCCTTTCAAGATCATTGTGCTGGATGAGGCA 10635 Query 254238 GACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTT 254297 ||| ||||||||| ||||||||| || || | ||||| | |||||||| ||||| Sbjct 10634 GACTCCATGACGGGCGACGCGCAATCGGCGTTGCGCCGCATGATGGAGAACTACTCCAAG 10575 Query 254298 GTGACGCGTTTTTGCCTGGTGTGCAACTACGTG--TCGAAGATCATCGCCCCGCTGGCTT 254355 || ||||| || || || | || ||||||||| ||| | | || | ||| |||| | Sbjct 10574 GTCACGCGCTTCTGTCTCATTTGTAACTACGTGAGTCGCA--TTATTGAGCCGGTGGCCT 10517 Query 254356 CTCGGTGCGCCAAGTTTCGATT 254377 | || ||||||||||| || || Sbjct 10516 CGCGCTGCGCCAAGTTCCGGTT 10495 >seq18936 Length=24579 Score = 104 bits (114), Expect = 5e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| |||||||||||||| ||||| | Sbjct 21295 ACGCCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGCATC 21236 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || |||||||||||||| ||||| ||||| |||||| | |||| |||||| Sbjct 21235 GAGATCATGTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACCCAGC 21176 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 || |||| | ||| ||||| |||| |||||||| |||| | | | || Sbjct 21175 GAGTACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAATTCATG 21116 Query 157424 CCGATGAGCGCGACGGGAAGCG 157445 ||||||||| | ||||| |||| Sbjct 21115 CCGATGAGCTCCACGGGCAGCG 21094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073497672174144