Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq14049 147 3e-30 seq14048 147 3e-30 >seq14049 Length=3113 Score = 147 bits (162), Expect = 3e-30 Identities = 473/727 (65%), Gaps = 8/727 (1%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCA-ATCTAGGACATTCATCCGGACACATCAACG 63246 ||||||||| || ||||| |||| | ||| |||| ||| | |||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATC-AGGAGCTTCGTTCGGACAGAACAAAC 1367 Query 63247 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATA 63305 ||||| || | ||| || || ||||| || || || || | ||| || || || | Sbjct 1366 TCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGA 1307 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 | || || | | | || |||||| || ||||| ||||| |||||| | Sbjct 1306 ACAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCG 1248 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | | || | ||||||||| |||||||| ||||| | ||| |||||| |||| Sbjct 1247 AACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCT 1188 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 ||||| || | || | ||| |||| ||| | ||||| | ||| || || || || || Sbjct 1187 CCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTG 1128 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAATTGATA 63543 || || ||||| ||| ||| |||| |||||||||||| | | | |||| Sbjct 1127 GAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT- 1069 Query 63544 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGC 63603 || || || || ||| || ||||| | ||||| | || | |||||| ||||||| Sbjct 1068 -GCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGC 1010 Query 63604 CTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAG 63663 | || ||| || || |||| || | || || |||| || | || | | Sbjct 1009 CCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCG 950 Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63723 |||| |||||||| | || || | |||||||| || | || | || | || | || Sbjct 949 TTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGT 890 Query 63724 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63783 |||||| | || | | || ||| | || || || | || || ||||| | || Sbjct 889 ACGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCA 830 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 | ||||| || | || || | |||| ||| | | | || | |||| | ||||| | Sbjct 829 TCTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACG 770 Query 63844 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCT 63903 | || || ||||| |||| |||| |||||| | |||| ||||| |||| ||||||| Sbjct 769 TCTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCT 710 Query 63904 TATCCTT 63910 ||||| Sbjct 709 CGTCCTT 703 >seq14048 Length=3126 Score = 147 bits (162), Expect = 3e-30 Identities = 473/727 (65%), Gaps = 8/727 (1%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCA-ATCTAGGACATTCATCCGGACACATCAACG 63246 ||||||||| || ||||| |||| | ||| |||| ||| | |||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATC-AGGAGCTTCGTTCGGACAGAACAAAC 1367 Query 63247 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATA 63305 ||||| || | ||| || || ||||| || || || || | ||| || || || | Sbjct 1366 TCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGA 1307 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 | || || | | | || |||||| || ||||| ||||| |||||| | Sbjct 1306 ACAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCG 1248 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | | || | ||||||||| |||||||| ||||| | ||| |||||| |||| Sbjct 1247 AACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCT 1188 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 ||||| || | || | ||| |||| ||| | ||||| | ||| || || || || || Sbjct 1187 CCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTG 1128 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAATTGATA 63543 || || ||||| ||| ||| |||| |||||||||||| | | | |||| Sbjct 1127 GAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT- 1069 Query 63544 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGC 63603 || || || || ||| || ||||| | ||||| | || | |||||| ||||||| Sbjct 1068 -GCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGC 1010 Query 63604 CTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAG 63663 | || ||| || || |||| || | || || |||| || | || | | Sbjct 1009 CCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCG 950 Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63723 |||| |||||||| | || || | |||||||| || | || | || | || | || Sbjct 949 TTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGT 890 Query 63724 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63783 |||||| | || | | || ||| | || || || | || || ||||| | || Sbjct 889 ACGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCA 830 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 | ||||| || | || || | |||| ||| | | | || | |||| | ||||| | Sbjct 829 TCTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACG 770 Query 63844 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCT 63903 | || || ||||| |||| |||| |||||| | |||| ||||| |||| ||||||| Sbjct 769 TCTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCT 710 Query 63904 TATCCTT 63910 ||||| Sbjct 709 CGTCCTT 703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629663822160240