Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq14049 152 7e-32 seq14048 152 7e-32 >seq14049 Length=3113 Score = 152 bits (168), Expect = 7e-32 Identities = 470/725 (65%), Gaps = 4/725 (1%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||||||||| || ||||| |||| | ||||| ||| | |||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACT 1366 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||||| || | ||| || || ||||| || || || || | ||| || || || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 || || | | | || |||||| || ||||| ||||| |||||| | | Sbjct 1305 CAAGTCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAA 1246 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | || ||||||||| |||||||| ||||| | ||| |||||| |||||| Sbjct 1245 CACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCC 1186 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||| || | || | ||| |||| ||| | ||||| | ||| || || || |||||||| Sbjct 1185 CTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGA 1126 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATAT--TACTAATTGATAGA 66338 | || ||||| ||| ||| ||||| | |||||||||| | | | |||| Sbjct 1125 GGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT--G 1068 Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398 || || || || ||| || ||||| | ||||| | || | ||| || ||||||||| Sbjct 1067 CCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCC 1008 Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 66458 || || || ||| |||| || | || || |||| || | || ||| Sbjct 1007 TCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGTT 948 Query 66459 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 66518 || |||||||| | || || | |||||||| || | || | || | || | |||| Sbjct 947 CCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTAC 888 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 |||| | || | | || ||| | || || || | || || ||||| | ||| Sbjct 887 GTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCATC 828 Query 66579 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 66638 ||||| || | || |||| ||| ||| | | | || | |||| | ||||| || Sbjct 827 TGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACGTC 768 Query 66639 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 66698 || || ||||| |||| |||| |||||| | |||| ||||| |||||||||| | Sbjct 767 TTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTCG 708 Query 66699 TCCTT 66703 ||||| Sbjct 707 TCCTT 703 >seq14048 Length=3126 Score = 152 bits (168), Expect = 7e-32 Identities = 470/725 (65%), Gaps = 4/725 (1%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||||||||| || ||||| |||| | ||||| ||| | |||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACT 1366 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||||| || | ||| || || ||||| || || || || | ||| || || || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 || || | | | || |||||| || ||||| ||||| |||||| | | Sbjct 1305 CAAGTCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAA 1246 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | || ||||||||| |||||||| ||||| | ||| |||||| |||||| Sbjct 1245 CACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCC 1186 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||| || | || | ||| |||| ||| | ||||| | ||| || || || |||||||| Sbjct 1185 CTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGA 1126 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATAT--TACTAATTGATAGA 66338 | || ||||| ||| ||| ||||| | |||||||||| | | | |||| Sbjct 1125 GGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT--G 1068 Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398 || || || || ||| || ||||| | ||||| | || | ||| || ||||||||| Sbjct 1067 CCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCC 1008 Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 66458 || || || ||| |||| || | || || |||| || | || ||| Sbjct 1007 TCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGTT 948 Query 66459 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 66518 || |||||||| | || || | |||||||| || | || | || | || | |||| Sbjct 947 CCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTAC 888 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 |||| | || | | || ||| | || || || | || || ||||| | ||| Sbjct 887 GTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCATC 828 Query 66579 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 66638 ||||| || | || |||| ||| ||| | | | || | |||| | ||||| || Sbjct 827 TGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACGTC 768 Query 66639 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 66698 || || ||||| |||| |||| |||||| | |||| ||||| |||||||||| | Sbjct 767 TTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTCG 708 Query 66699 TCCTT 66703 ||||| Sbjct 707 TCCTT 703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658012098883720