Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq17656 181 9e-41 >seq17656 Length=11375 Score = 181 bits (200), Expect = 9e-41 Identities = 316/458 (69%), Gaps = 20/458 (4%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| || || || ||||| | | ||||| | | || || ||||||||||| ||| Sbjct 732 CGGGAATGGCCGTGGGGTTCGCGTGAGCTGCTTCTGAAGAGGCTCAACGTGGTTCAGGTA 791 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||| || |||||||| | ||| | || || || || |||| || | || || || Sbjct 792 AACATGCGCGTCACCAATCACGTGGATGAATTCACCTGGTTTCAGCCCGGCCACTTGTGC 851 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | || ||| || || |||||||| || ||||| ||||| || ||||| |||||||| Sbjct 852 CACTAGCCGCGTGAGCAGCGCGTAGCTTGCAATGTTGAACGGCACGCCGAGTCCCATGTC 911 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| || | |||||||| ||||||||| ||||| || |||||||| ||||| || || Sbjct 912 GGCTGAGCGCTGGTACATCTGGCAGGAGAGCTCTCCGTCCGCCACGTAGAACTGGCAGAA 971 Query 21128 AACGTGACAAGGAGGGAGAGCCATC-CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAA 21186 | |||||| || || || |||||| || | || || |||||||||||||| ||| || Sbjct 972 CATGTGACACGGTGGCAGCGCCATCTCGTTC-AGATCGGCGGGGTTCCACGCAGACAAAA 1030 Query 21187 CGATGCGCCGATCG-------TGG--GGCCGCCTGTTAATTAGATCCACCACGTAACGCA 21237 | || || || ||| ||| || || ||| ||| ||| | | | Sbjct 1031 CAATCCGGCGGTCGGTCGGGTTGGTCCGCAGCTTGTGAAT---------CACCTCAGCAA 1081 Query 21238 GCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAAT 21297 | |||||||| ||||| || ||||| || | || | |||| || ||||| | Sbjct 1082 GTTGGTCCACACCCTGTCCAGTGTAGTCCGCATGCATGTCCGTATACTTGGCTCCAAAGT 1141 Query 21298 GTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCC 21335 | | ||||||||| ||||| ||||| || || |||||| Sbjct 1142 GGCGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCCC 1179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427674164313840