Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq14049 174 2e-38 seq14048 174 2e-38 seq18936 129 8e-25 >seq14049 Length=3113 Score = 174 bits (192), Expect = 2e-38 Identities = 477/726 (66%), Gaps = 6/726 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||||||||| || ||||| | || | ||||| ||||| ||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACT 1366 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978 ||||| |||| ||| || || ||||| || || || || | ||| || || || || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 || || | | | ||| |||||| || ||||| ||||| |||||| | | Sbjct 1305 CAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGA 1247 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 | || | ||||||||| |||||||| ||||| | |||| |||||| ||||| Sbjct 1246 ACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTC 1187 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | || | ||| |||| ||| | ||||| | ||| || || || ||||||| Sbjct 1186 CCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGG 1127 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 80216 | | || ||||| ||| ||| ||||| |||||||||||| | | | |||| Sbjct 1126 AGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT-- 1069 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 || || || || ||| || ||||| | ||||| | || | ||| || |||||||| Sbjct 1068 GCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 1009 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 ||| ||| || || |||| || | || || |||| || | || || Sbjct 1008 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGT 949 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 ||| |||||||| | || || | |||||||| || | || | |||| || | ||| Sbjct 948 TCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 889 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 ||||| | || | || || ||| | || || || | ||| || ||||| | ||| Sbjct 888 CGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCAT 829 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||||| || | || |||| ||| || | | | || | ||| | ||||| || Sbjct 828 CTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACGT 769 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 || || ||||| |||| |||| |||||| | |||| ||||| |||||||||| | Sbjct 768 CTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTC 709 Query 80577 ATCCTT 80582 ||||| Sbjct 708 GTCCTT 703 >seq14048 Length=3126 Score = 174 bits (192), Expect = 2e-38 Identities = 477/726 (66%), Gaps = 6/726 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||||||||| || ||||| | || | ||||| ||||| ||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACT 1366 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978 ||||| |||| ||| || || ||||| || || || || | ||| || || || || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 || || | | | ||| |||||| || ||||| ||||| |||||| | | Sbjct 1305 CAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGA 1247 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 | || | ||||||||| |||||||| ||||| | |||| |||||| ||||| Sbjct 1246 ACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTC 1187 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | || | ||| |||| ||| | ||||| | ||| || || || ||||||| Sbjct 1186 CCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGG 1127 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 80216 | | || ||||| ||| ||| ||||| |||||||||||| | | | |||| Sbjct 1126 AGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT-- 1069 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 || || || || ||| || ||||| | ||||| | || | ||| || |||||||| Sbjct 1068 GCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 1009 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 ||| ||| || || |||| || | || || |||| || | || || Sbjct 1008 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGT 949 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 ||| |||||||| | || || | |||||||| || | || | |||| || | ||| Sbjct 948 TCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 889 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 ||||| | || | || || ||| | || || || | ||| || ||||| | ||| Sbjct 888 CGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCAT 829 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||||| || | || |||| ||| || | | | || | ||| | ||||| || Sbjct 828 CTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACGT 769 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 || || ||||| |||| |||| |||||| | |||| ||||| |||||||||| | Sbjct 768 CTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTC 709 Query 80577 ATCCTT 80582 ||||| Sbjct 708 GTCCTT 703 >seq18936 Length=24579 Score = 129 bits (142), Expect = 8e-25 Identities = 310/458 (68%), Gaps = 17/458 (4%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || || ||||| || ||||| ||||| || | ||| || |||||||| || | Sbjct 21003 ACAGCAGGCACGCGAAGTCCGTGTGCATGCCCTCATCACGACTGATGAGTTCGTTCGAGA 20944 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | | || || ||||| || || ||||| || ||||| || || || ||| || || || Sbjct 20943 AGCTCAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGA-GCAGAACGAGCCC 20885 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-----ACTGG 50125 || ||||| || || ||||| ||||| || || | || | ||| || || Sbjct 20884 GAGAAGAAAATGCCCTCTACCGCGGCGAACGCCAGCAGACGCTCAGGGTACGACGACACA 20825 Query 50126 CGCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 || | || | | |||| ||||||| |||||||| | || || || ||||| Sbjct 20824 CGAGGGTC--GCA-CCACCGAAGAGCCCAGCGAGCCTTCTTCTCCACGCACGGGATCGTC 20768 Query 50185 TCTATGGCATTAAAGAGATAGtttttttC-ATTACTATCTTTAACATAAGTATCGATCAA 50243 || ||||| | | ||| | || || | | | ||| || | || || ||||||| Sbjct 20767 TCGATGGCTCGCAGCAAATAATCCTTCTCCACTGC-ATCCTTGATGTACGTGTCGATCAG 20709 Query 50244 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 50303 || ||||| |||||| || ||||| || ||||| ||||| || |||||||| || | Sbjct 20708 CAGCGAATACACTTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCG 20649 Query 50304 AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATT 50361 ||| || | | |||||| || | | || ||||| || | || || ||||| || Sbjct 20648 AGCTTCCGGCACCTGCACCTCGTTGCTGAA--GTTCATTGCCAGGTTCTCGTTCACGATG 20591 Query 50362 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 ||||||||||| ||||| ||||||| || || || || Sbjct 20590 CCGTCACTGGCAGCAAAGAACGCCAGCACGTGCTTGAT 20553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718093425694120