Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq14049 187 3e-42 seq14048 187 3e-42 seq18936 129 8e-25 >seq14049 Length=3113 Score = 187 bits (206), Expect = 3e-42 Identities = 482/727 (66%), Gaps = 8/727 (1%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACATTCATTCGGACACATCAATG 72001 ||||||||| || ||||| ||| |||| | ||||| ||| |||||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCA-GCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAAC 1367 Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATA 72060 ||||| |||| | | || || ||||| || || || || | ||| || || || | Sbjct 1366 TCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGA 1307 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 | || || | | | ||| |||||| || ||||| ||||| |||||| | Sbjct 1306 ACAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCG 1248 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | || | ||||||||| |||||||| ||||| | |||| |||||| |||| Sbjct 1247 AACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCT 1188 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | || | ||| |||| ||| | ||||| | ||| || || || |||||| Sbjct 1187 CCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTG 1128 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT--TGATA 72298 || | || ||||| ||| ||| ||||| |||||||||||||| || |||| Sbjct 1127 GAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGATG 1068 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || || || || ||| || ||||| | ||||| | || | ||| || ||||||| Sbjct 1067 --CCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGC 1010 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 |||| || || ||| |||| || | || || |||| || | || | Sbjct 1009 CCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCG 950 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| |||||||| | || || | |||||||| || | || | |||| || | || Sbjct 949 TTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGT 890 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 |||||| | || | || || ||| | || || || | ||| || ||||| | || Sbjct 889 ACGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCA 830 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | || |||| ||| || | | | || | |||| | ||||| | Sbjct 829 TCTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACG 770 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 | || || ||||| |||| |||| |||||| | |||| ||||| |||| ||||| | Sbjct 769 TCTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCT 710 Query 72659 TATCCTT 72665 ||||| Sbjct 709 CGTCCTT 703 >seq14048 Length=3126 Score = 187 bits (206), Expect = 3e-42 Identities = 482/727 (66%), Gaps = 8/727 (1%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACATTCATTCGGACACATCAATG 72001 ||||||||| || ||||| ||| |||| | ||||| ||| |||||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCA-GCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAAC 1367 Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATA 72060 ||||| |||| | | || || ||||| || || || || | ||| || || || | Sbjct 1366 TCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGA 1307 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 | || || | | | ||| |||||| || ||||| ||||| |||||| | Sbjct 1306 ACAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCG 1248 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | || | ||||||||| |||||||| ||||| | |||| |||||| |||| Sbjct 1247 AACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCT 1188 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | || | ||| |||| ||| | ||||| | ||| || || || |||||| Sbjct 1187 CCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTG 1128 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT--TGATA 72298 || | || ||||| ||| ||| ||||| |||||||||||||| || |||| Sbjct 1127 GAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGATG 1068 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || || || || ||| || ||||| | ||||| | || | ||| || ||||||| Sbjct 1067 --CCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGC 1010 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 |||| || || ||| |||| || | || || |||| || | || | Sbjct 1009 CCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCG 950 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| |||||||| | || || | |||||||| || | || | |||| || | || Sbjct 949 TTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGT 890 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 |||||| | || | || || ||| | || || || | ||| || ||||| | || Sbjct 889 ACGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCA 830 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | || |||| ||| || | | | || | |||| | ||||| | Sbjct 829 TCTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACG 770 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 | || || ||||| |||| |||| |||||| | |||| ||||| |||| ||||| | Sbjct 769 TCTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCT 710 Query 72659 TATCCTT 72665 ||||| Sbjct 709 CGTCCTT 703 >seq18936 Length=24579 Score = 129 bits (142), Expect = 8e-25 Identities = 310/458 (68%), Gaps = 17/458 (4%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || || ||||| || ||||| |||||||| | ||| || | |||||| || | Sbjct 21003 ACAGCAGGCACGCGAAGTCCGTGTGCATGCCCTCATCACGACTGATGAGTTCGTTCGAGA 20944 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | | || || ||||| || || ||||| || ||||| || ||||| ||| || || || Sbjct 20943 AGCTCAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGA-GCAGAACGAGCCC 20885 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCACT 42234 || ||||| || || ||||| || || || || | || | ||| || || ||| Sbjct 20884 GAGAAGAAAATGCCCTCTACCGCGGCGAACGCCAGCAGACGCTCAGGGTACGACGACACA 20825 Query 42235 -----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 ||| | | |||| ||||||| |||||||| | || || || ||||| Sbjct 20824 CGAGGGTC--GCA-CCACCGAAGAGCCCAGCGAGCCTTCTTCTCCACGCACGGGATCGTC 20768 Query 42290 TCTATGGCATTAAAGAGATAGtttttttC-ATTACTATCTTTAACATATGTATCGATCAA 42348 || ||||| | | ||| | || || | | | ||| || | || || ||||||| Sbjct 20767 TCGATGGCTCGCAGCAAATAATCCTTCTCCACTGC-ATCCTTGATGTACGTGTCGATCAG 20709 Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408 || ||||| ||| || || ||||| || ||||| ||||| || |||||||| || | Sbjct 20708 CAGCGAATACACTTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCG 20649 Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATT 42466 || || | ||||| || || | | || ||||| || | || |||||||| || Sbjct 20648 AGCTTCCGGCACCTGCACCTCGTTGCTGAA--GTTCATTGCCAGGTTCTCGTTCACGATG 20591 Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 ||||||||||| ||||| ||||||| || || || || Sbjct 20590 CCGTCACTGGCAGCAAAGAACGCCAGCACGTGCTTGAT 20553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670975332975080