Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18936 158 2e-33 seq17656 132 7e-26 seq17475 123 4e-23 seq14049 118 2e-21 seq14048 118 2e-21 >seq18936 Length=24579 Score = 158 bits (174), Expect = 2e-33 Identities = 430/647 (66%), Gaps = 25/647 (4%) Strand=Plus/Plus Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 ||||| ||||| ||||| ||| || |||||| | ||||||||| |||| || ||| Sbjct 20652 TGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAAGTGTATTCGCTGCTG 20711 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACG--CAATCGACA 125349 || |||| |||||| ||| ||| | | | || | | || | ||||| | Sbjct 20712 ATCGACACGTACATCAAGGAT--GCAGTGGAGAAGGATTATTTGCTGCGAGCCATCGAGA 20769 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 || | |||| | || ||||||| |||| |||||||| ||| || Sbjct 20770 CGATCCCGTGCGTGGAGAAGAAGGCTCGCTGGGCTCTTCGGTGGTGCGACCCTCGTGTGT 20829 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-T 125468 | |||||| | || | ||| |||| |||||||| ||||||||||| ||||| ||||| | Sbjct 20830 CGTCGTACCCTGAGCGTCTGCTGGCGTTCGCCGCGGTAGAGGGCATTTTCTTCTCGGGCT 20889 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||| ||| | ||||| ||||||||||||||||| |||||||| || |||| | Sbjct 20890 CGTTCTGC-TCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTGAGCTTCTCG 20948 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCG 125587 ||||| | || ||| || |||||| | ||| ||||| || || |||| ||| Sbjct 20949 AACGAACTCATCAGTCGTGATGAGGGCATGCACACGGACTTCGCGTGCCTGCTGTACTCG 21008 Query 125588 CAACTATCTGCGTCCCGAGTGC---AGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 | || | | | ||| ||| || ||| || | | | || || Sbjct 21009 AAGCT---GGTGAACAAGCTGCCGGAGAGCC-GCG-TGCA--------CGAGATCGTGCG 21055 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT-CAGCATGATTG 125703 || |||||| ||| || || ||||| | ||| || || || || ||| | || | Sbjct 21056 TGACGCCGTGGCGATCGAGCACGAGTTCGTGCGCGACTCGCTGCCCGTGGAGC-TCATCG 21114 Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 ||||||| | ||| |||||| ||||||| ||||| ||||| || || || |||||| Sbjct 21115 GCATGAATTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACT 21174 Query 125764 AGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | || || |||||| ||||||| ||||| || || || | ||| || || | Sbjct 21175 CGCTGGGTGTGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCT 21234 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | | |||| ||||||||||||||||||||| || |||||||| Sbjct 21235 CGATGCAGGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTAC 21281 >seq17656 Length=11375 Score = 132 bits (146), Expect = 7e-26 Identities = 283/415 (68%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 ||| |||||| || || || || ||||| ||||||||| | |||| || |||||||| Sbjct 1183 AAGTGGGCGACCTTGGACCGGTCTACGGCTTCCAGTGGCGCCACTTTGGAGCCAAGTATA 1124 Query 70122 TAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGA 70179 ||| ||| | | ||||| | || |||||||| || ||| |||| || | ||| | Sbjct 1123 CGGACATGCATG-CGGACTACACTGGACAGGGTGTGGACCAACTTGCTGAGG-TGATTCA 1066 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239 || || |||||| || || || | |||| || ||| | ||||| || || || Sbjct 1065 CAAGCTGCGGACCAACCCGACCGACCGCCGGATTGTTTTGTCTGCGTGGAACCCCGCCGA 1006 Query 70240 TTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATG 70298 | || || | ||||| || |||||||||||| |||| || ||||| ||| | || | Sbjct 1005 TCTGAACGAGATGGCGCTGCCACCGTGTCACATGTTCTGC-CAGTTCTACGTGGCGGACG 947 Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358 | | | || ||| ||||| ||| | ||||||||||| ||||| || || || | Sbjct 946 GAGAGCTCTCCTGCCAGATGTACCAGCGCTCAGCCGACATGGGACTCGGCGTGCCGTTCA 887 Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418 ||||||||||||| | || | |||| | | || || | |||| |||||| | Sbjct 886 ACATTGCAAGCTACGCGCTGCTCACGCGGCTAGTGGCACAAGTGGCCGGGCTGAAACCAG 827 Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 || ||| | ||| ||||| ||||| || || || | || ||| | ||||| Sbjct 826 GTGAATTCATCCACGTGATTGGTGACGCGCATGTTTACCTGAACCACGTTGAGCC 772 >seq17475 Length=37620 Score = 123 bits (136), Expect = 4e-23 Identities = 417/647 (64%), Gaps = 42/647 (6%) Strand=Plus/Minus Query 127105 CGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACA 127164 ||| ||||||| | ||||| || || || | || | ||||||||| || |||||||| Sbjct 22237 CGGAAAAAGATCATACCGGCACGGGGTCCACGCAGGGACTTGTGCGTCGTCGTGGTCACG 22178 Query 127165 ATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT-GTG 127223 |||||||| || |||||||||| | |||| |||| || ||| || | ||| Sbjct 22177 ATGTCACAGTAGTCAAAGGGGCTCGCGTGCTCTTTAGTAGCAACCAGGCC-GCTGTAGTG 22119 Query 127224 TGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAAT-CGTCTAT 127282 || |||||| ||| |||| | |||| | ||||| |||| ||||| || | | Sbjct 22118 GGCCATATCGCACATGAGCAGAGCGCCGTTGTCGTCGGCGATCTTGCGGAAGGCGGCG-T 22060 Query 127283 AGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGAT 127342 ||||| || || || ||| ||| ||| | ||| | || ||||| ||| Sbjct 22059 AGTCCCAGTCACGCGGGTAGGCGCTGCCACCGCACACGATCATGGCGGGCTTGAACAGAG 22000 Query 127343 TGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCT--GAGGATCCACCTTGTA 127400 ||| |||||| || || | |||| | || || |||| | | | ||| ||| Sbjct 21999 CGGCCTGCTCGGCGAGCTTCTCGAAGTCAATCAGACCGGTCTCGGCGCTTACACG--GTA 21942 Query 127401 CGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACG---TTGCG--------------- 127442 ||||| || ||||| | | || || || |||||| ||||| Sbjct 21941 CGGCAGACTCTCGAAGTACACAGACGTGGCCGACACGGCCTTGCGCGTCTTCTCAGCCTT 21882 Query 127443 ------------GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGAT 127490 ||| ||||| |||||||||||||| |||||| ||||| |||||||| Sbjct 21881 GGAGTACGTGTAGAAGCCGTGGGTCAGGTGGCCTCCACTGGGCAGGTCGAGGCCCATGAT 21822 Query 127491 TCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTA 127550 | ||||||| | | || |||||||||||||||||||| |||||| ||||| Sbjct 21821 ACGGTCGTGCGGGCGCAGAAGACCCGTGTACACGGCAAAGTTGGCGGGCGAGCCGGAGTA 21762 Query 127551 CGGTTGTACACACACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTG 127610 ||| || || || ||||| | | ||| || | | || | || ||||| Sbjct 21761 CGGCTGCACGTTGACGCCCCACTTGTCAGCGTCCAGGCCGTAGGCCGTCAGGGCGCGCTG 21702 Query 127611 CTGTGCTAGCAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCG 127668 ||| || | ||||| ||||| | |||||| || || ||||| ||| ||| Sbjct 21701 CTGGCACAGGATCTCGATCTTGTCGATGACCTCGTTGCCGCCGTAGTAGCGCGCGTTC-- 21644 Query 127669 GGCCTACCCTCCGAGTACTTGTTGATGAGACACGAACTCATGCATTC 127715 ||| ||||| | |||||||||| |||| ||||| | || ||| || Sbjct 21643 GGCAGGCCCTCGGCGTACTTGTTGGTGAGGCACGAGCCCAGGCAGTC 21597 >seq14049 Length=3113 Score = 118 bits (130), Expect = 2e-21 Identities = 329/498 (66%), Gaps = 14/498 (3%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| | |||||||| || ||||| || ||||| || || || | || |||| || ||| Sbjct 1213 GCCATTTACTTGGAGCCGTGGCATGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAAC 1272 Query 96966 TCTGGCTTTGAAGAG--GCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGAT 97022 || | | ||| |||| | || | |||||||| || || || |||||||| || Sbjct 1273 CACGG---TAACGAGCTGCACCGTGCGCGCGACTTGTTCTACGCCCTGTGGGTGCCCGAC 1329 Query 97023 TTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCA 97082 ||||||||||||||||| | | | |||| | ||||| | | || || || | Sbjct 1330 CTGTTCATGAAGCGCGTCGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCGAACGAAGCT 1389 Query 97083 CCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAA 97142 || | ||| | | | |||||||| || ||||| || | |||| | |||||| | Sbjct 1390 CCTGATCTCTACAAGTGCTGGGGTGAGGAGTTCGAAACGCTGTACGAGAAGTACGAGAAG 1449 Query 97143 GAGGGCCG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGC 97201 ||||| || || |||||| || | || | | |||||| |||||| || || Sbjct 1450 GAGGGACGTGCCCGCAAGACGA-TCAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGC 1508 Query 97202 TCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAA 97261 ||| | ||||| || |||| ||| ||||||||||| | | || ||||| || Sbjct 1509 GCAGATTGAGACGGGCGTGCCGTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCGAA 1568 Query 97262 CCAACGCCACTTGGGCACCATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTA 97318 ||| | || | ||||| ||| |||| ||| ||||| || | | ||||| Sbjct 1569 CCAGCAGAACCTCGGCACGATC---CGCTCTAGCAACTTGTGCTGTGAGGTGATGGAGTA 1625 Query 97319 CGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 | | || || |||||| ||| || ||| ||||| || || ||||||||||| || Sbjct 1626 CACGTCACCAGACGAGGTGGCGGTGTGCAACCTGGCCTCTGTGGCCCTGCCCAAGTTCGT 1685 Query 97379 AGAGGGTAAAGTGTTTAA 97396 |||| | ||||| || Sbjct 1686 GGAGGATGGCGTGTTCAA 1703 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | | | ||| || | || ||| | || Sbjct 2359 TACAAGACGGTGTGGGAGATCAAGCAGAAGGCCATTCTGGATTTGTCGGCGGACCGCGGC 2418 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| |||||| || ||| | || | || ||||||| || || ||| Sbjct 2419 GCCTACATTTGCCAGAGCCAGTCGCTGAACATTCACATTGCCGACCCGACGATCAGCAAG 2478 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 |||| || || ||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct 2479 CTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCATGTACTA 2534 >seq14048 Length=3126 Score = 118 bits (130), Expect = 2e-21 Identities = 329/498 (66%), Gaps = 14/498 (3%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| | |||||||| || ||||| || ||||| || || || | || |||| || ||| Sbjct 1213 GCCATTTACTTGGAGCCGTGGCATGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAAC 1272 Query 96966 TCTGGCTTTGAAGAG--GCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGAT 97022 || | | ||| |||| | || | |||||||| || || || |||||||| || Sbjct 1273 CACGG---TAACGAGCTGCACCGTGCGCGCGACTTGTTCTACGCCCTGTGGGTGCCCGAC 1329 Query 97023 TTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCA 97082 ||||||||||||||||| | | | |||| | ||||| | | || || || | Sbjct 1330 CTGTTCATGAAGCGCGTCGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCGAACGAAGCT 1389 Query 97083 CCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAA 97142 || | ||| | | | |||||||| || ||||| || | |||| | |||||| | Sbjct 1390 CCTGATCTCTACAAGTGCTGGGGTGAGGAGTTCGAAACGCTGTACGAGAAGTACGAGAAG 1449 Query 97143 GAGGGCCG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGC 97201 ||||| || || |||||| || | || | | |||||| |||||| || || Sbjct 1450 GAGGGACGTGCCCGCAAGACGA-TCAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGC 1508 Query 97202 TCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAA 97261 ||| | ||||| || |||| ||| ||||||||||| | | || ||||| || Sbjct 1509 GCAGATTGAGACGGGCGTGCCGTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCGAA 1568 Query 97262 CCAACGCCACTTGGGCACCATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTA 97318 ||| | || | ||||| ||| |||| ||| ||||| || | | ||||| Sbjct 1569 CCAGCAGAACCTCGGCACGATC---CGCTCTAGCAACTTGTGCTGTGAGGTGATGGAGTA 1625 Query 97319 CGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 | | || || |||||| ||| || ||| ||||| || || ||||||||||| || Sbjct 1626 CACGTCACCAGACGAGGTGGCGGTGTGCAACCTGGCCTCTGTGGCCCTGCCCAAGTTCGT 1685 Query 97379 AGAGGGTAAAGTGTTTAA 97396 |||| | ||||| || Sbjct 1686 GGAGGATGGCGTGTTCAA 1703 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | | | ||| || | || ||| | || Sbjct 2359 TACAAGACGGTGTGGGAGATCAAGCAGAAGGCCATTCTGGATTTGTCGGCGGACCGCGGC 2418 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| |||||| || ||| | || | || ||||||| || || ||| Sbjct 2419 GCCTACATTTGCCAGAGCCAGTCGCTGAACATTCACATTGCCGACCCGACGATCAGCAAG 2478 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 |||| || || ||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct 2479 CTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCATGTACTA 2534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740878261133080