Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq17300 140 3e-28 seq17519 84.2 2e-11 >seq17300 Length=26109 Score = 140 bits (154), Expect = 3e-28 Identities = 192/264 (73%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558 |||||| || ||||| ||||| || || | |||| || || | | || |||||| Sbjct 14728 CACGCCGGTACTGCCGAAGCCGCCAGCTCCACGCGCCGTGTCCTCGAT-CTCGTCCACCT 14786 Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618 | | ||| || ||| || | ||| |||||||||||| | ||||| || || Sbjct 14787 CCTGCACCTCCGGGTACTCGATCTTCTCCAGGATCAGCTGCGCCACGCGGTCTCCGCGCT 14846 Query 5619 TTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTA 5676 | || ||| || | | ||||| ||||||||| | ||||||||||||||||||||| Sbjct 14847 TCACGGGGAAGTCTTCG--GCCGAGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTA 14904 Query 5677 GTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCG 5736 ||| ||||| ||||||||||||||| ||| ||||| | ||| | || ||||||||||| Sbjct 14905 GTCAGCGTCGATCACGCCCGCGCCCGTGTCAATGAACTTCTTAAGTGCGAGGCCGGAGCG 14964 Query 5737 GGGAGCCACGCGGCCGTAGCACCC 5760 || ||||| || ||||||| || Sbjct 14965 AGGCGCCACACGCGCGTAGCAGCC 14988 >seq17519 Length=15843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 5497 GCGCACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCA 5555 || |||||| || ||||| ||||| || || | |||| || || | | || ||| Sbjct 14119 GCCCACGCCGGTACTGCCGAAGCCGCCAGCTCCACGCGCCGTGTCCTCGAT-CTCGTCCA 14061 Query 5556 CCTCTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCG 5615 |||| | ||| || ||| || | ||| |||||||||||| | ||||| || Sbjct 14060 CCTCCTGCACCTCCGGGTACTCGATCTTCTCCAGGATCAGCTGCGCCACGCGGTCTCCGC 14001 Query 5616 TCTTTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCG 5673 ||| || ||| || | | ||||| ||||||||| | |||||||||||||||||| Sbjct 14000 GCTTCACGGGGAAGTCTTCG--GCCGAGTGGTTGAACAGGATCACGCCCACGTTGCCGCG 13943 Query 5674 GTAGTCGGCGTCTATCAC 5691 |||||||| ||| ||||| Sbjct 13942 GTAGTCGGTGTCGATCAC 13925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429952021921496